1EYF
REFINED STRUCTURE OF THE DNA METHYL PHOSPHOTRIESTER REPAIR DOMAIN OF E. COLI ADA
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 2 mM N-Ada10; 25 mM sodium phosphate buffer pH 6.4, 50 mM NaCl, and 10 mM 2-mercaptoethanol; 90% H2O, 10% D2O | 90% H2O/10% D2O | 6.4 | ambient | 298 | ||
2 | 2D NOESY | 2 mM N-Ada10; 25 mM sodium phosphate buffer pH 6.4, 50 mM NaCl, and 10 mM 2-mercaptoethanol; 100% D2O | 90% H2O/10% D2O | 6.4 | ambient | 298 | ||
3 | 3D_15N-separated_NOESY | 2 mM N-Ada10 U-15N; 25 mM sodium phosphate buffer pH 6.4, 50 mM NaCl, and 10 mM 2-mercaptoethanol; 90% H2O, 10% D2O | 100% D2O | 6.4 | ambient | 298 | ||
4 | HNHA | 2 mM N-Ada10 U-15N; 25 mM sodium phosphate buffer pH 6.4, 50 mM NaCl, and 10 mM 2-mercaptoethanol; 90% H2O, 10% D2O | 100% D2O | 6.4 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 500 |
2 | Bruker | AMX | 600 |
3 | Varian | VXRS | 500 |
4 | Varian | UNITY | 500 |
5 | Varian | UNITYPLUS | 400 |
6 | Varian | UNITYPLUS | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry | the structures are based on a total of 1014 restraints, 872 are NOE-derived distance constraints, 82 dihedral angle restraints,46 distance restraints from hydrogen bonds, and 14 zinc cluster distance restraints | UXNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 25 |
Representative Model | 13 (lowest energy) |
Additional NMR Experimental Information | |
---|---|
Details | This structure was determined using standard 2D homonuclear and 3D heteronuclear techinques |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | UXNMR | ||
2 | collection | VNMR | ||
3 | processing | Felix | 95 | |
4 | data analysis | XEASY | Brartels et al | |
5 | structure solution | DGII | Havel et al | |
6 | refinement | DGII | Havel et al |