1EXK

SOLUTION STRUCTURE OF THE CYSTEINE-RICH DOMAIN OF THE ESCHERICHIA COLI CHAPERONE PROTEIN DNAJ.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY600 uM DnaJ CRD U-15N; 20 mM Tris-d11 pH 6.8; 300 uM ZnCl2; 50 mM NaCl;95% H2O/5% D2O50 mM6.81 atm293
23D_13C-separated_NOESY600 uM DnaJ CRD U-15N,13C; 20 mM Tris-d11 pH 6.8; 300 uM ZnCl2; 50 mM NaCl; 2 mM DTT; 0.02% NaN395% H2O/5% D2O50 mM6.81 atm293
313C/15N CN-NOESY600 uM DnaJ CRD U-15N,13C; 20 mM Tris-d11 pH 6.8; 300 uM ZnCl2; 50 mM NaCl; 2 mM DTT; 0.02% NaN395% H2O/5% D2O50 mM6.81 atm293
4HNHA600 uM DnaJ CRD U-15N; 20 mM Tris-d11 pH 6.8; 300 uM ZnCl2; 50 mM NaCl;95% H2O/5% D2O50 mM6.81 atm293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAMX500
2BrukerDRX600
3BrukerDMX750
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics followed by simulated annealingThe structures are based on 1361 unique NOE-based distance restraints and 99 torsion angle restaints and 24 stereo assignments.XwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations,structures with the lowest energy
Conformers Calculated Total Number112
Conformers Submitted Total Number20
Representative Model19 (closest to the average)
Additional NMR Experimental Information
DetailsThe sequence-specific assignments were completed using standard double and triple resonance NMR experiments.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR2.1Bruker
2data analysisNMRView4.1.2Johnson
3data analysisSANE1.0Duggan and Legge
4structure solutionDYANA1.5Guentert
5refinementAmber6.0Case
6iterative matrix relaxationSPIRIT1.0Zhu