1E7J
HMG-D complexed to a bulge DNA
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | NOESY | LOW | 6.0 | 293 | ||||
| 2 | TOCSY | LOW | 6.0 | 293 | ||||
| 3 | COSY | LOW | 6.0 | 293 | ||||
| 4 | 15N-HSQC | LOW | 6.0 | 293 | ||||
| 5 | 3D CBCA(CO)NH | LOW | 6.0 | 293 | ||||
| 6 | 3D 15N NOESY-HSQC | LOW | 6.0 | 293 | ||||
| 7 | 3D 13C NOESY-HSQC | LOW | 6.0 | 293 | ||||
| 8 | 3D HCCH-TOCSY | LOW | 6.0 | 293 | ||||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AMX | 500 |
| 2 | Bruker | DMX | 600 |
| 3 | Bruker | Avance | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| SIMULATED ANNEALING, MINIMIZATION | REFINEMENT DETAILS WILL BE FOUND IN THE PAPER | X-PLOR 3.851, CHARMM |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | LOW VALUES OF THE NOE ENERGY TERM AND PROTEIN LOCATED WITHIN MINOR GROOVE OF DNA |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (n/a) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | X-PLOR 3.851, CHARMM | 24 | BRUNGER, MACKERELL |
| 2 | structure solution | XPLOR | 3.851 | |
| 3 | structure solution | CHARMM | 24 | |
