X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.41.55M AMMONIUM FORMATE, 0.1M HEPES 7.4, pH 7.40
Crystal Properties
Matthews coefficientSolvent content
2.852

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.69α = 61.08
b = 79.33β = 78.22
c = 81.95γ = 70.54
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 5.2RELETTRA5.2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.64095.40.05112.71.73628452
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.6991.60.252.61.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1QAG2.620344461767950.2320.268RANDOM37
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
8.28-0.55-1.07-3.92-0.5-4.32
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor34.4
p_staggered_tor18
p_scangle_it5.1
p_mcangle_it4.3
p_scbond_it4.1
p_planar_tor3.7
p_mcbond_it2.8
p_multtor_nbd0.27
p_singtor_nbd0.21
p_xyhbond_nbd0.19
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor34.4
p_staggered_tor18
p_scangle_it5.1
p_mcangle_it4.3
p_scbond_it4.1
p_planar_tor3.7
p_mcbond_it2.8
p_multtor_nbd0.27
p_singtor_nbd0.21
p_xyhbond_nbd0.19
p_chiral_restr0.16
p_planar_d0.053
p_angle_d0.043
p_plane_restr0.017
p_bond_d0.013
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7548
Nucleic Acid Atoms
Solvent Atoms74
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing