1BN5

HUMAN METHIONINE AMINOPEPTIDASE 2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.4pH 5.4
Crystal Properties
Matthews coefficientSolvent content
2.842

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.49α = 90
b = 99.38β = 90
c = 101.59γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120CCDADSC QUANTUM 4MIRRORS1998-06-26M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE F1CHESSF1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.826.5990.0690.06914.73.84229919
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.999.40.1490.1496.83.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1XGS1.82542282301998.40.1830.228RANDOM21.5
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.494.0423.451
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor26.1
p_staggered_tor14.1
p_planar_tor6.6
p_scangle_it3.84
p_scbond_it2.55
p_mcangle_it2.41
p_mcbond_it1.74
p_multtor_nbd0.241
p_singtor_nbd0.174
p_xyhbond_nbd0.126
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor26.1
p_staggered_tor14.1
p_planar_tor6.6
p_scangle_it3.84
p_scbond_it2.55
p_mcangle_it2.41
p_mcbond_it1.74
p_multtor_nbd0.241
p_singtor_nbd0.174
p_xyhbond_nbd0.126
p_planar_d0.032
p_angle_d0.026
p_bond_d0.012
p_angle_deg
p_hb_or_metal_coord
p_plane_restr
p_chiral_restr
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2780
Nucleic Acid Atoms
Solvent Atoms249
Heterogen Atoms2

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing
REFMACrefinement
CCP4data scaling