1BJ6
1H NMR OF (12-53) NCP7/D(ACGCC) COMPLEX, 10 STRUCTURES
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | NOESY | WATER | LOW SALT CONDITIONS | 6.0 | 1 atm | 303 | ||
2 | TOCSY | WATER | LOW SALT CONDITIONS | 6.0 | 1 atm | 303 | ||
3 | DQF | WATER | LOW SALT CONDITIONS | 6.0 | 1 atm | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX600 | 600 |
NMR Refinement | ||
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Method | Details | Software |
DYNAMICAL SIMULATED ANNEALING | THE PROTEIN PART OF THE STRUCTURE WAS FIRST GENERATED USING A RESTRAINTED DYNAMICAL ANNEALING CALCULATION. THE D(ACGCC) NUCLEIC ACID UNDER A DNA CONFORMATION WAS DOCKED APPROXIMATIVELY TO THE PROTEIN BASED ON THE 28 INTERMOLECULAR NOES. THE DOCKED STRUCTURE WAS ENERGY-MINIMIZED UNDER NOES RESTRAINTS. THIS INITIAL COMPLEXED STRUCTURE WAS THEN USED FOR A SECOND SET OF SIMULATED ANNEALING CALCULATION. | Discover |
NMR Ensemble Information | |
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Conformer Selection Criteria | LEAST RESTRAINT VIOLATION AND LOWEST TOTAL ENERGY |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 10 |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Discover | BIOSYM | |
2 | structure solution | BRUKER DISNMR | DISNMR | |
3 | structure solution | BIOSYM/MSI |