1BD1

CRYSTALLOGRAPHIC STUDY OF ONE TURN OF G/C-RICH B-DNA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICRODIALYSIS277MICRODIALYSIS, temperature 277.00K
Crystal Properties
Matthews coefficientSolvent content
2.0941.21

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 32.15α = 90
b = 25.49β = 116.71
c = 34.82γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayDIFFRACTOMETER
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.43062

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION1.610321060.16
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
n_sugar_angle_it4.39
n_phos_bond_it3.75
n_phos_angle_it3.62
n_sugar_bond_it3.43
n_multtor_nbd0.232
n_singtor_nbd0.128
n_phos_bond_angle_d0.073
n_chiral_restr0.066
n_phos_bond_d0.05
n_sugar_bond_angle_d0.043
RMS Deviations
KeyRefinement Restraint Deviation
n_sugar_angle_it4.39
n_phos_bond_it3.75
n_phos_angle_it3.62
n_sugar_bond_it3.43
n_multtor_nbd0.232
n_singtor_nbd0.128
n_phos_bond_angle_d0.073
n_chiral_restr0.066
n_phos_bond_d0.05
n_sugar_bond_angle_d0.043
n_plane_restr0.025
n_sugar_bond_d0.014
n_bond_d
n_angle_d
n_planar_d
n_hb_or_metal_coord
n_bond_angle_restr
n_dihedral_angle_restr
n_impr_tor
n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms202
Solvent Atoms41
Heterogen Atoms10

Software

Software
Software NamePurpose
NUCLSQrefinement