1B8F

Histidine ammonia-lyase (HAL) from Pseudomonas putida


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.1CRYSTALLIZED FROM 2.0 M (NH4)2SO4, 1 % GLYCEROL, 2 % PEG 400, 0.1 M HEPES AT pH 8.1. 20 % (V/V) GLYCEROL WERE USED AS CRYOPROTECTANT
Crystal Properties
Matthews coefficientSolvent content
2.856

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.267α = 90
b = 116.788β = 90
c = 129.532γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100AREA DETECTORSIEMENS1998-02-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.139838.27.92.92897215.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.216618.231.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTHISTIDASE IN SPACE GROUP P21 (NOT DEPOSITED)2.13928972289721485830.1970.1870.26322.9
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor37.4
p_staggered_tor19.5
p_planar_tor8.3
p_scangle_it2.3
p_mcangle_it2.05
p_scbond_it1.61
p_special_tor1.5
p_mcbond_it1.39
p_multtor_nbd0.265
p_singtor_nbd0.18
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor37.4
p_staggered_tor19.5
p_planar_tor8.3
p_scangle_it2.3
p_mcangle_it2.05
p_scbond_it1.61
p_special_tor1.5
p_mcbond_it1.39
p_multtor_nbd0.265
p_singtor_nbd0.18
p_xyhbond_nbd0.143
p_chiral_restr0.119
p_planar_d0.058
p_angle_d0.024
p_plane_restr0.0223
p_bond_d0.014
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3762
Nucleic Acid Atoms
Solvent Atoms210
Heterogen Atoms11

Software

Software
Software NamePurpose
AMoREphasing
REFMACrefinement
XDSdata reduction
CCP4data scaling