1B3F

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KHK


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.5CO-CRYSTALLIZED WITH URANIUM ACETATE, PH 5.5
Crystal Properties
Matthews coefficientSolvent content
2.4845

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 109.936α = 90
b = 75.892β = 90
c = 70.594γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120IMAGE PLATEMARRESEARCHMIRRORSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.81597.20.1025.25.85531020.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.993.80.2762.64.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUTPDB ENTRY 1OLB1.81555310268197.20.17720.21723.5
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.1
p_staggered_tor14.3
p_planar_tor3.8
p_scangle_it2.681
p_mcangle_it1.903
p_scbond_it1.805
p_mcbond_it1.369
p_multtor_nbd0.251
p_singtor_nbd0.177
p_xyhbond_nbd0.123
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.1
p_staggered_tor14.3
p_planar_tor3.8
p_scangle_it2.681
p_mcangle_it1.903
p_scbond_it1.805
p_mcbond_it1.369
p_multtor_nbd0.251
p_singtor_nbd0.177
p_xyhbond_nbd0.123
p_planar_d0.031
p_angle_d0.029
p_bond_d0.013
p_angle_deg
p_hb_or_metal_coord
p_plane_restr
p_chiral_restr
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4201
Nucleic Acid Atoms
Solvent Atoms455
Heterogen Atoms8

Software

Software
Software NamePurpose
DENZOdata reduction
SCALAdata scaling
CCP4model building
REFMACrefinement
CCP4data scaling
CCP4phasing