1AKQ

D95A OXIDIZED FLAVODOXIN MUTANT FROM D. VULGARIS


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17PROTEIN WAS CRYSTALLIZED FROM 60-70% A.S., 100MM TRIS-HCL, PH=7.0.
Crystal Properties
Matthews coefficientSolvent content
2.952

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.805α = 90
b = 52.805β = 90
c = 139.948γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMARRESEARCH1995-08-26M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.5SRSPX9.5

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8310980.5216.682.81793919.25
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.831.85670.351.22

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.91017939179398961000.1960.20.190.24RANDOM19.8
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor17.1
p_planar_tor1.811
p_multtor_nbd0.252
p_singtor_nbd0.18
p_chiral_restr0.14
p_planar_d0.032
p_angle_d0.03
p_bond_d0.01
p_angle_deg
p_hb_or_metal_coord
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor17.1
p_planar_tor1.811
p_multtor_nbd0.252
p_singtor_nbd0.18
p_chiral_restr0.14
p_planar_d0.032
p_angle_d0.03
p_bond_d0.01
p_angle_deg
p_hb_or_metal_coord
p_mcbond_it
p_mcangle_it
p_scbond_it
p_scangle_it
p_plane_restr
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1101
Nucleic Acid Atoms
Solvent Atoms100
Heterogen Atoms31

Software

Software
Software NamePurpose
AMoREphasing
PROLSQrefinement
DENZOdata reduction
SCALEPACKdata scaling