1AHO

THE AB INITIO STRUCTURE DETERMINATION AND REFINEMENT OF A SCORPION PROTEIN TOXIN


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.8pH 6.8
Crystal Properties
Matthews coefficientSolvent content
1.9636.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.9α = 90
b = 40.7β = 90
c = 30.1γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray287IMAGE PLATEMARRESEARCHNA1994-06-26M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X310.72, 0.92EMBL/DESY, HamburgX31

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.96416910.0736.76310017.23
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
10.960.99800.5431.3

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONDIRECT METHODS0.96823100130609880.15810.72
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor19.5
p_staggered_tor12.6
p_planar_tor4.9
p_scangle_it2.37
p_scbond_it1.692
p_mcangle_it1.523
p_mcbond_it1.106
p_xhyhbond_nbd0.485
p_multtor_nbd0.201
p_singtor_nbd0.192
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor19.5
p_staggered_tor12.6
p_planar_tor4.9
p_scangle_it2.37
p_scbond_it1.692
p_mcangle_it1.523
p_mcbond_it1.106
p_xhyhbond_nbd0.485
p_multtor_nbd0.201
p_singtor_nbd0.192
p_xyhbond_nbd0.148
p_chiral_restr0.127
p_planar_d0.041
p_plane_restr0.041
p_angle_d0.03
p_bond_d0.014
p_hb_or_metal_coord0.011
p_angle_deg
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms500
Nucleic Acid Atoms
Solvent Atoms129
Heterogen Atoms

Software

Software
Software NamePurpose
MOSFILMdata collection
ROTAVATAdata reduction
AGROVATAdata reduction
SHAKE-N-BAKEmodel building
PROFFTrefinement
MOSFLMdata reduction
CCP4data scaling
ROTAVATA)data scaling
SHAKE-N-BAKEphasing