X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1vapor diffusion - hanging drop - microseeding7HPLC PURIFIED SI-CRAMBIN PROTEIN WAS DISSOLVED AT 25 MG/ML IN 80% ETHANOL/WATER (V/V), AND EQUILIBRATED AGAINS 60% ETHANOL. AFTER 10 DAYS, THE RESERVOIR WAS LOWERED TO 50% AND MICROSEEDED BY THE STREAK SEEDING METHOD (CAT WHISKER). AFTER LOWERING THE RESERVOIR TO 45%, GOOD CRYSTALS WERE FORMED., pH 7., vapor diffusion - hanging drop - microseeding
Crystal Properties
Matthews coefficientSolvent content
1.7730.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.759α = 90
b = 18.404β = 90.7
c = 22.273γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray150IMAGE PLATERIGAKUCOLLIMATOR1992-10-26M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.8917.6788.770.040.18.3123165
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
10.890.89774.960.10.153.20.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONALREADY SOLVEDDIFFERENCE DENSITY PEAKS0.891021980384.60.1475.5
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor25.6
p_staggered_tor10.2
p_planar_tor5.1
p_multtor_nbd0.16
p_singtor_nbd0.158
p_xyhbond_nbd0.158
p_scbond_it0.136
p_scangle_it0.136
p_mcbond_it0.11
p_mcangle_it0.11
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor25.6
p_staggered_tor10.2
p_planar_tor5.1
p_multtor_nbd0.16
p_singtor_nbd0.158
p_xyhbond_nbd0.158
p_scbond_it0.136
p_scangle_it0.136
p_mcbond_it0.11
p_mcangle_it0.11
p_chiral_restr0.063
p_planar_d0.058
p_angle_d0.033
p_bond_d0.014
p_hb_or_metal_coord0.01
p_plane_restr0.01
p_angle_deg
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms326
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms3

Software

Software
Software NamePurpose
LEHMANN-LARSENdata collection
TEXSANdata reduction
PROLSQrefinement
LEHMANN-LARSENdata reduction
TEXSANdata scaling