1A61

THROMBIN COMPLEXED WITH A BETA-MIMETIC THIAZOLE-CONTAINING INHIBITOR


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1vapor diffusion - hanging drop and macroseeding7.3THROMBIN-HIRUGEN WAS CRYSTALLIZED FROM 0.1 M SODIUM PHOSPHATE BUFFER AT PH 7.3, 28% PEG 8000 IN HANGING DROPS WITH MACROSEEDING. THE MOL 127 INHIBITOR WAS ADDED BY SOAKING., vapor diffusion - hanging drop and macroseeding
Crystal Properties
Matthews coefficientSolvent content
2.451

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.85α = 90
b = 72.41β = 101
c = 72.97γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298IMAGE PLATERIGAKU RAXIS II1995-07-15M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.260770.0522.4145171
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.27540.1472.9

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.2713643760.14828
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor30
p_staggered_tor22
p_scangle_it4.4
p_planar_tor4
p_scbond_it3.2
p_mcangle_it2.6
p_mcbond_it1.8
p_multtor_nbd0.3
p_xyhbond_nbd0.3
p_singtor_nbd0.24
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor30
p_staggered_tor22
p_scangle_it4.4
p_planar_tor4
p_scbond_it3.2
p_mcangle_it2.6
p_mcbond_it1.8
p_multtor_nbd0.3
p_xyhbond_nbd0.3
p_singtor_nbd0.24
p_chiral_restr0.18
p_planar_d0.064
p_angle_d0.05
p_plane_restr0.037
p_bond_d0.015
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2333
Nucleic Acid Atoms
Solvent Atoms141
Heterogen Atoms38

Software

Software
Software NamePurpose
R-AXISdata collection
R-AXISdata reduction
PROFFTrefinement
R-AXISdata scaling