188D

HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7292pH 7.00, VAPOR DIFFUSION, temperature 292.00K
Crystal Properties
Matthews coefficientSolvent content
2.3146.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.74α = 90
b = 42.74β = 90
c = 24.57γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray115DIFFRACTOMETERRIGAKU AFC-5
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.28215240.183
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
n_sugar_angle_it2.127
n_phos_angle_it2.087
n_phos_bond_it1.593
n_sugar_bond_it1.353
n_singtor_nbd0.127
n_multtor_nbd0.12
n_phos_bond_angle_d0.038
n_angle_d0.016
n_phos_bond_d0.016
n_chiral_restr0.008
RMS Deviations
KeyRefinement Restraint Deviation
n_sugar_angle_it2.127
n_phos_angle_it2.087
n_phos_bond_it1.593
n_sugar_bond_it1.353
n_singtor_nbd0.127
n_multtor_nbd0.12
n_phos_bond_angle_d0.038
n_angle_d0.016
n_phos_bond_d0.016
n_chiral_restr0.008
n_bond_d0.006
n_plane_restr0.005
n_planar_d
n_hb_or_metal_coord
n_bond_angle_restr
n_dihedral_angle_restr
n_impr_tor
n_sugar_bond_d
n_sugar_bond_angle_d
n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms161
Solvent Atoms42
Heterogen Atoms

Software

Software
Software NamePurpose
NUCLSQrefinement