8FVY

40S subunit of the Giardia lamblia 80S ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
OSCOP2B SuperfamilyTranslational machinery components8107240 3000571 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8107184 3000100 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyS13-like H2TH domain8107204 3000053 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8107178 3001397 SCOP2B (2022-06-29)
USCOP2B SuperfamilyRibosomal protein S108107168 3001336 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8107164 3000068 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8107170 3000210 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8107194 3000068 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyNucleic acid-binding proteins8107166 3000135 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyRibosomal S3Ae-like8107200 3002166 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]18S rRNA---
J [auth I]40S ribosomal protein S8
K [auth J]Ribosomal protein S9
L [auth K]Ribosomal protein S10B -
M [auth L]SSU ribosomal protein S17P
Ribosomal protein S13
Ribosomal protein S14
Ribosomal protein S15
Ribosomal protein S16
Ribosomal protein S17
Ribosomal protein S18
B [auth A]40S ribosomal protein SA
SSU ribosomal protein S19E (Fragment)
Ribosomal protein S20
40S ribosomal protein S21
SSU ribosomal protein S8P (Fragment)
SSU ribosomal protein S12P
Ribosomal protein S24
40S ribosomal protein S25 -
AA [auth a]40S ribosomal protein S26
BA [auth b]Ribosomal protein S27
CA [auth c]Ribosomal protein S28
C [auth B]40S ribosomal protein S3a
DA [auth d]Ribosomal protein S29A
EA [auth f]Ribosomal protein S27a
FA [auth g]tRNA---
GA [auth M]Ribosomal protein S12
HA [auth e]40S ribosomal protein S30
D [auth C]Ribosomal protein S2
E [auth D]Ribosomal protein S3
F [auth E]40S ribosomal protein S4
G [auth F]SSU ribosomal protein S7P (Fragment)
H [auth G]40S ribosomal protein S6
I [auth H]40S ribosomal protein S7

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth I]IPR001047Small ribosomal subunit protein eS8Family
J [auth I]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
K [auth J]IPR002942RNA-binding S4 domainDomain
K [auth J]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
K [auth J]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
K [auth J]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
K [auth J]IPR022801Small ribosomal subunit protein uS4Family
L [auth K]IPR037447Small ribosomal subunit protein eS10Family
L [auth K]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
L [auth K]IPR005326Plectin/eS10, N-terminalDomain
M [auth L]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
M [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth L]IPR000266Small ribosomal subunit protein uS17Family
M [auth L]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
M [auth L]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
IPR000589Small ribosomal subunit protein uS15Family
IPR001971Small ribosomal subunit protein uS11Family
IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
IPR002222Small ribosomal subunit protein uS19Family
IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR000754Small ribosomal subunit protein uS9Family
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
IPR001210Small ribosomal subunit protein eS17Family
IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
IPR001892Small ribosomal subunit protein uS13Family
IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
B [auth A]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
B [auth A]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth A]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth A]IPR001865Small ribosomal subunit protein uS2Family
B [auth A]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
IPR001266Small ribosomal subunit protein eS19Family
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR001848Small ribosomal subunit protein uS10Family
IPR027486Small ribosomal subunit protein uS10 domainDomain
IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
IPR001931Small ribosomal subunit protein eS21Family
IPR000630Small ribosomal subunit protein uS8Family
IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
IPR006032Small ribosomal subunit protein uS12Family
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
IPR001976Small ribosomal subunit protein eS24Family
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR004977Small ribosomal subunit protein eS25Family
AA [auth a]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
AA [auth a]IPR000892Small ribosomal subunit protein eS26Family
BA [auth b]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
BA [auth b]IPR000592Small ribosomal subunit protein eS27Family
BA [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CA [auth c]IPR028626Ribosomal protein eS28 conserved siteConserved Site
CA [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth c]IPR000289Small ribosomal subunit protein eS28Family
C [auth B]IPR001593Small ribosomal subunit protein eS1Family
C [auth B]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
DA [auth d]IPR001209Small ribosomal subunit protein uS14Family
DA [auth d]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
DA [auth d]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
EA [auth f]IPR002906Small ribosomal subunit protein eS31Domain
EA [auth f]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth f]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
EA [auth f]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
GA [auth M]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
GA [auth M]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
HA [auth e]IPR006846Small ribosomal subunit protein eS30Family
D [auth C]IPR000851Small ribosomal subunit protein uS5Family
D [auth C]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
D [auth C]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
D [auth C]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
D [auth C]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth C]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
D [auth C]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
E [auth D]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
E [auth D]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
E [auth D]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
E [auth D]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
E [auth D]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
F [auth E]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
F [auth E]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
F [auth E]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
F [auth E]IPR013845Small ribosomal subunit protein eS4, central regionDomain
F [auth E]IPR000876Small ribosomal subunit protein eS4Family
F [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
F [auth E]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
F [auth E]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
F [auth E]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
F [auth E]IPR005824KOWDomain
G [auth F]IPR000235Small ribosomal subunit protein uS7Family
G [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
G [auth F]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
H [auth G]IPR014401Small ribosomal subunit protein eS6-likeFamily
H [auth G]IPR001377Small ribosomal subunit protein eS6Family
H [auth G]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
I [auth H]IPR000554Small ribosomal subunit protein eS7Family