8CVM

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth c]PF00181e8cvmc1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
A [auth c]PF03947e8cvmc2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
J [auth m]PF01196e8cvmm1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
K [auth n]PF00861e8cvmn1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
L [auth o]PF01245e8cvmo1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
M [auth p]PF00453e8cvmp1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
N [auth q]PF00829e8cvmq1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
O [auth r]PF00237e8cvmr1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
P [auth s]PF00276e8cvms1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
Q [auth t]PF00467,PF17136e8cvmt1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
R [auth u]PF01386e8cvmu2 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
R [auth u]PF14693e8cvmu1 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology)T: Ribosomal protein TL5/L25 C-terminal domain-relatedF: PF14693ECOD (1.6)
S [auth v]PF01016e8cvmv1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
B [auth d]PF00297e8cvmd1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
T [auth w]PF00830e8cvmw1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
U [auth x]PF00831e8cvmx1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
V [auth y]PF00327e8cvmy1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
W [auth z]PF01783e8cvmz1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
X [auth 0]PF00471e8cvm01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
Y [auth 1]PF00468e8cvm11 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
Z [auth 2]PF01632e8cvm21 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
AA [auth 4]PF01197e8cvm41 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
C [auth e]PF00573e8cvme1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
FA [auth 3]PF00444e8cvm31 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
D [auth f]PF00281,PF00673e8cvmf1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
E [auth g]PF00347e8cvmg2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
F [auth i]PF00572e8cvmi1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
G [auth j]PF00238e8cvmj1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
H [auth k]PF00828e8cvmk1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
I [auth l]PF00252e8cvml1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
X [auth 0]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
Y [auth 1]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
Z [auth 2]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
AA [auth 4]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
EA [auth C]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
FA [auth 3]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth c]50S ribosomal protein L2
J [auth m]50S ribosomal protein L17
K [auth n]50S ribosomal protein L18
L [auth o]50S ribosomal protein L19
M [auth p]50S ribosomal protein L20
N [auth q]50S ribosomal protein L21
O [auth r]50S ribosomal protein L22
P [auth s]50S ribosomal protein L23
Q [auth t]50S ribosomal protein L24
R [auth u]50S ribosomal protein L25
S [auth v]50S ribosomal protein L27
B [auth d]50S ribosomal protein L3
T [auth w]50S ribosomal protein L28
U [auth x]50S ribosomal protein L29
V [auth y]50S ribosomal protein L30
W [auth z]50S ribosomal protein L32
X [auth 0]50S ribosomal protein L33
Y [auth 1]50S ribosomal protein L34
Z [auth 2]50S ribosomal protein L35
AA [auth 4]50S ribosomal protein L31
BA [auth a]23S ribosomal RNA---
CA [auth b]5S ribosomal RNA---
C [auth e]50S ribosomal protein L4
DA [auth V]50S ribosomal protein bL37---
EA [auth C]Initiator fMet RNA---
FA [auth 3]50S ribosomal protein L36
D [auth f]50S ribosomal protein L5
E [auth g]50S ribosomal protein L6
F [auth i]50S ribosomal protein L13
G [auth j]50S ribosomal protein L14
H [auth k]50S ribosomal protein L15
I [auth l]50S ribosomal protein L16

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth c]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
A [auth c]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
A [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
A [auth c]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
A [auth c]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
A [auth c]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
A [auth c]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
A [auth c]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
A [auth c]IPR002171Large ribosomal subunit protein uL2Family
J [auth m]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
J [auth m]IPR000456Large ribosomal subunit protein bL17Family
K [auth n]IPR005484Large ribosomal subunit protein uL18Family
K [auth n]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
L [auth o]IPR001857Large ribosomal subunit protein bL19Family
L [auth o]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
L [auth o]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
L [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth p]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
M [auth p]IPR005813Large ribosomal subunit protein bL20Family
N [auth q]IPR028909Large ribosomal subunit protein bL21-likeFamily
N [auth q]IPR001787Large ribosomal subunit protein bL21Family
N [auth q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
N [auth q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
O [auth r]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
O [auth r]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
O [auth r]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
O [auth r]IPR001063Large ribosomal subunit protein uL22Family
O [auth r]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
P [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth s]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
P [auth s]IPR013025Large ribosomal subunit protein uL23-likeFamily
Q [auth t]IPR003256Large ribosomal subunit protein uL24Family
Q [auth t]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Q [auth t]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth t]IPR005824KOWDomain
Q [auth t]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth t]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
R [auth u]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
R [auth u]IPR001021Ribosomal protein bL25, long-formFamily
R [auth u]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
R [auth u]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
R [auth u]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
R [auth u]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
S [auth v]IPR001684Large ribosomal subunit protein bL27Family
S [auth v]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
B [auth d]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
B [auth d]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
B [auth d]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
B [auth d]IPR000597Large ribosomal subunit protein uL3Family
T [auth w]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
T [auth w]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
T [auth w]IPR026569Large ribosomal subunit protein bL28Family
T [auth w]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
U [auth x]IPR001854Large ribosomal subunit protein uL29Family
U [auth x]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
U [auth x]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
V [auth y]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
V [auth y]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
V [auth y]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
W [auth z]IPR002677Large ribosomal subunit protein bL32Family
W [auth z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
W [auth z]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
X [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
X [auth 0]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
X [auth 0]IPR001705Large ribosomal subunit protein bL33Family
X [auth 0]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
Y [auth 1]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
Y [auth 1]IPR000271Large ribosomal subunit protein bL34Family
Z [auth 2]IPR021137Large ribosomal subunit protein bL35-likeFamily
Z [auth 2]IPR001706Large ribosomal subunit protein bL35Family
Z [auth 2]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
AA [auth 4]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
AA [auth 4]IPR027491Large ribosomal subunit protein bL31 type AFamily
AA [auth 4]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
AA [auth 4]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
C [auth e]IPR013005Large ribosomal subunit protein uL4-likeFamily
C [auth e]IPR002136Large ribosomal subunit protein uL4Family
C [auth e]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
FA [auth 3]IPR000473Large ribosomal subunit protein bL36Family
FA [auth 3]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
D [auth f]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
D [auth f]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
D [auth f]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
D [auth f]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
D [auth f]IPR002132Large ribosomal subunit protein uL5Family
E [auth g]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
E [auth g]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
E [auth g]IPR000702Large ribosomal subunit protein uL6-likeFamily
E [auth g]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
E [auth g]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
F [auth i]IPR005822Large ribosomal subunit protein uL13Family
F [auth i]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
F [auth i]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
G [auth j]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
G [auth j]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
G [auth j]IPR000218Large ribosomal subunit protein uL14Family
G [auth j]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
H [auth k]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
H [auth k]IPR021131Large ribosomal subunit protein uL15/eL18Domain
H [auth k]IPR030878Large ribosomal subunit protein uL15Family
H [auth k]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
I [auth l]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
I [auth l]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
I [auth l]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
I [auth l]IPR016180Large ribosomal subunit protein uL16 domainDomain
I [auth l]IPR047873Large ribosomal subunit protein uL16Family