7NJ3
1918 H1N1 Viral influenza polymerase heterotrimer with Nb8196 core
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00603 | e7nj3A1 | A: a+b complex topology | X: Polymerase acidic protein (From Topology) | H: Polymerase acidic protein (From Topology) | T: Polymerase acidic protein | F: PF00603 | ECOD (1.6) |
A | PF00603 | e7nj3A2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF00603 | ECOD (1.6) |
B | PF00602 | e7nj3B2 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: PF00602 | ECOD (1.6) |
B | PF00602 | e7nj3B1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00602 | ECOD (1.6) |
B | PF00602 | e7nj3B3 | A: extended segments | X: RNA polymerase PB1 C-terminal fragment (From Topology) | H: RNA polymerase PB1 C-terminal fragment (From Topology) | T: RNA polymerase PB1 C-terminal fragment | F: PF00602 | ECOD (1.6) |
C | PF20948 | e7nj3C3 | A: a+b two layers | X: a+b domain in PB2 (From Topology) | H: a+b domain in PB2 (From Topology) | T: a+b domain in PB2 | F: PF20948 | ECOD (1.6) |
C | PF20949 | e7nj3C2 | A: a+b complex topology | X: Middle domain in PB2 (From Topology) | H: Middle domain in PB2 (From Topology) | T: Middle domain in PB2 | F: PF20949 | ECOD (1.6) |
C | PF20947 | e7nj3C1 | A: extended segments | X: RNA polymerase PB2 N-terminal fragment (From Topology) | H: RNA polymerase PB2 N-terminal fragment (From Topology) | T: RNA polymerase PB2 N-terminal fragment | F: PF20947 | ECOD (1.6) |
F | PF07686 | e7nj3F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | polymerase acidic protein | SAbDab (2024-06-07) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00603 | Influenza RNA-dependent RNA polymerase subunit PA (Flu_PA) | Influenza RNA-dependent RNA polymerase subunit PA | - | Family | |
PF00602 | Influenza RNA-dependent RNA polymerase subunit PB1 (Flu_PB1) | Influenza RNA-dependent RNA polymerase subunit PB1 | - | Family | |
PF20948 | Influenza RNA polymerase PB2 second domain (Flu_PB2_2nd) | Influenza RNA polymerase PB2 second domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain | |
PF20947 | Influenza RNA polymerase PB2 N-terminal region (Flu_PB2_1st) | Influenza RNA polymerase PB2 N-terminal region | - | Family | |
PF20949 | Influenza RNA polymerase PB2 middle domain (Flu_PB2_3rd) | Influenza RNA polymerase PB2 middle domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain | |