7KMT
Structure of the yeast TRAPPIII-Ypt1(Rab1) complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth G] | SCOP2B Superfamily | SNARE-like | 8090321 | 3001113 | SCOP2B (2022-06-29) |
D [auth I] | SCOP2B Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8065542 | 3001668 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | Ligand-binding domain in the NO signalling and Golgi transport | 8065542 | 3001668 | SCOP2B (2022-06-29) |
H [auth A] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057264 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | PF04099 | e7kmtH1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF04099 | ECOD (1.6) |
B [auth J] | PF04051 | e7kmtJ1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: PF04051 | ECOD (1.6) |
C [auth G] | PF04099 | e7kmtG1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF04099 | ECOD (1.6) |
D [auth I] | PF04051 | e7kmtI1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: PF04051 | ECOD (1.6) |
E [auth F] | PF04051 | e7kmtF1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: PF04051 | ECOD (1.6) |
F [auth E] | PF04051 | e7kmtE1 | A: a+b complex topology | X: H-NOX domain (From Topology) | H: H-NOX domain (From Topology) | T: H-NOX domain | F: PF04051 | ECOD (1.6) |
G [auth K] | PF04628 | e7kmtK1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF04628 | ECOD (1.6) |
H [auth A] | PF00071 | e7kmtA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth H] | PF04099 | Sybindin-like family (Sybindin) | Sybindin-like family | - | Family |
B [auth J] | PF04051 | Transport protein particle (TRAPP) component (TRAPP) | Transport protein particle (TRAPP) component | - | Family |
C [auth G] | PF04099 | Sybindin-like family (Sybindin) | Sybindin-like family | - | Family |
D [auth I], E [auth F] | PF04051 | Transport protein particle (TRAPP) component (TRAPP) | Transport protein particle (TRAPP) component | - | Family |
F [auth E] | PF04051 | Transport protein particle (TRAPP) component (TRAPP) | Transport protein particle (TRAPP) component | - | Family |
G [auth K] | PF04628 | Sedlin, N-terminal conserved region (Sedlin_N) | Sedlin, N-terminal conserved region | - | Family |
H [auth A] | PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |
I [auth B] | PF12739 | ER-Golgi trafficking TRAPP I complex 85 kDa subunit (TRAPPC-Trs85) | ER-Golgi trafficking TRAPP I complex 85 kDa subunit | - | Family |