7ENC
TFIID-based PIC-Mediator holo-complex in fully-assembled state (hPIC-MED)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
W [auth 0] | SCOP2B Superfamily | RING/U-box like | 8039298 | 3000160 | SCOP2B (2022-06-29) |
X [auth 8] | SCOP2B Superfamily | Protein kinase-like (PK-like) | 8042855 | 3000066 | SCOP2B (2022-06-29) |
Z [auth 1] | SCOP2B Superfamily | BSD domain-like | 8039783 | 3001039 | SCOP2B (2022-06-29) |
BA [auth 3] | SCOP2B Superfamily | vWA-like | 8054198 | 3000832 | SCOP2B (2022-06-29) |
EA [auth 6] | SCOP2B Superfamily | RecA-like P-loop NTPases | 8054245 | 3002019 | SCOP2B (2022-06-29) |
KA [auth DD] | SCOP2B Superfamily | Core histone-like | 8042407 | 3001387 | SCOP2B (2022-06-29) |
TA [auth Dd] | SCOP2B Superfamily | Core histone-like | 8042407 | 3001387 | SCOP2B (2022-06-29) |
LA [auth DE] | SCOP2B Superfamily | Taf5 N-terminal domain-like | 8034920 | 3001495 | SCOP2B (2022-06-29) |
UA [auth De] | SCOP2B Superfamily | Taf5 N-terminal domain-like | 8034920 | 3001495 | SCOP2B (2022-06-29) |
MA [auth DF] | SCOP2B Superfamily | Core histone-like | 8081687 | 3001387 | SCOP2B (2022-06-29) |
VA [auth Df] | SCOP2B Superfamily | Core histone-like | 8081687 | 3001387 | SCOP2B (2022-06-29) |
AB [auth Dm] | SCOP2B Superfamily | Core histone-like | 8036818 | 3001387 | SCOP2B (2022-06-29) |
BB [auth DO] | SCOP2B Superfamily | Transcription factor IIA (TFIIA) alpha-helical domain | 8037005 | 3001887 | SCOP2B (2022-06-29) |
BB [auth DO] | SCOP2B Superfamily | Transcription factor IIA (TFIIA) beta-barrel domain | 8037007 | 3001281 | SCOP2B (2022-06-29) |
LB [auth PD] | SCOP2B Superfamily | HRDC-like | 8106072 | 3000132 | SCOP2B (2022-06-29) |
NB [auth PF] | SCOP2B Superfamily | RPB6/omega subunit-like | 8106082 | 3000189 | SCOP2B (2022-06-29) |
SB [auth PK] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8080728 | 3001655 | SCOP2B (2022-06-29) |
TB [auth PL] | SCOP2B Superfamily | RNA polymerase subunits | 8103068 | 3001823 | SCOP2B (2022-06-29) |
B [auth m] | SCOP2B Superfamily | Mediator of RNA polymerase II transcription subunit 31 | 8105987 | 3002846 | SCOP2B (2022-06-29) |
Y [auth 9] | SCOP2B Superfamily | Cyclin-like | 8037909 | 3000768 | SCOP2B (2022-06-29) |
Y [auth 9] | SCOP2B Superfamily | Cyclin-like | 8037906 | 3000768 | SCOP2B (2022-06-29) |
AA [auth 2] | SCOP2B Superfamily | vWA-like | 8057086 | 3000832 | SCOP2B (2022-06-29) |
AA [auth 2] | SCOP2B Superfamily | Cysteine-rich domain | 8033482 | 3001452 | SCOP2B (2022-06-29) |
DA [auth 5] | SCOP2B Superfamily | TFB5-like | 8034306 | 3000733 | SCOP2B (2022-06-29) |
GA [auth EA] | SCOP2B Superfamily | Zinc beta-ribbon | 8043056 | 3001238 | SCOP2B (2022-06-29) |
HA [auth EB] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003067 | 3000034 | SCOP2B (2022-06-29) |
NA [auth DG] | SCOP2B Superfamily | Rap30/74 heterodimerisation domain-like | 8054049 | 3000142 | SCOP2B (2022-06-29) |
OA [auth DH] | SCOP2B Superfamily | Core histone-like | 8053232 | 3001387 | SCOP2B (2022-06-29) |
QA [auth DJ] | SCOP2B Superfamily | Core histone-like | 8053233 | 3001387 | SCOP2B (2022-06-29) |
XA [auth Dj] | SCOP2B Superfamily | Core histone-like | 8053233 | 3001387 | SCOP2B (2022-06-29) |
RA [auth DL] | SCOP2B Superfamily | Core histone-like | 8042408 | 3001387 | SCOP2B (2022-06-29) |
ZA [auth Dl] | SCOP2B Superfamily | Core histone-like | 8042408 | 3001387 | SCOP2B (2022-06-29) |
SA [auth Dc] | SCOP2B Superfamily | Core histone-like | 8086844 | 3001387 | SCOP2B (2022-06-29) |
YA [auth Dk] | SCOP2B Superfamily | Core histone-like | 8036824 | 3001387 | SCOP2B (2022-06-29) |
CB [auth DP] | SCOP2B Superfamily | TATA-box binding protein-like | 8036295 | 3000705 | SCOP2B (2022-06-29) |
CB [auth DP] | SCOP2B Superfamily | TATA-box binding protein-like | 8036293 | 3000705 | SCOP2B (2022-06-29) |
EB [auth BA] | SCOP2B Superfamily | Cyclin-like | 8043882 | 3000768 | SCOP2B (2022-06-29) |
EB [auth BA] | SCOP2B Superfamily | Cyclin-like | 8043880 | 3000768 | SCOP2B (2022-06-29) |
FB | SCOP2B Superfamily | Rap30/74 heterodimerisation domain-like | 8003550 | 3000142 | SCOP2B (2022-06-29) |
FB | SCOP2B Superfamily | Winged helix DNA-binding domain | 8003005 | 3000034 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth f] | PF04934 | e7encf1 | A: extended segments | X: Mediator of RNA polymerase II transcription subunit 6 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 6 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 6 | F: PF04934 | ECOD (1.6) |
O [auth v] | PF06179 | e7encv1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription subunit 22 (From Topology) | H: Mediator of RNA polymerase II transcription subunit 22 (From Topology) | T: Mediator of RNA polymerase II transcription subunit 22 | F: PF06179 | ECOD (1.6) |
X [auth 8] | PF00069 | e7enc81 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00069 | ECOD (1.6) |
BA [auth 3] | PF03850 | e7enc31 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03850 | ECOD (1.6) |
BA [auth 3] | PF03850 | e7enc32 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF03850 | ECOD (1.6) |
LA [auth DE] | PF00400 | e7encDE2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400 | ECOD (1.6) |
LA [auth DE] | PF04494 | e7encDE1 | A: alpha superhelices | X: Taf5 N-terminal domain-like (From Topology) | H: Taf5 N-terminal domain-like (From Topology) | T: Taf5 N-terminal domain-like | F: PF04494 | ECOD (1.6) |
UA [auth De] | PF00400 | e7encDe1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400 | ECOD (1.6) |
UA [auth De] | PF04494 | e7encDe2 | A: alpha superhelices | X: Taf5 N-terminal domain-like (From Topology) | H: Taf5 N-terminal domain-like (From Topology) | T: Taf5 N-terminal domain-like | F: PF04494 | ECOD (1.6) |
BB [auth DO] | PF02751 | e7encDO2 | A: beta duplicates or obligate multimers | X: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | H: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | T: Transcription factor IIA (TFIIA), beta-barrel domain | F: PF02751 | ECOD (1.6) |
BB [auth DO] | PF02268 | e7encDO1 | A: alpha duplicates or obligate multimers | X: TFIIA, alpha-helical domain (From Topology) | H: TFIIA, alpha-helical domain (From Topology) | T: TFIIA, alpha-helical domain | F: PF02268 | ECOD (1.6) |
LB [auth PD] | PF03874 | e7encPD1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF03874 | ECOD (1.6) |
NB [auth PF] | PF01192 | e7encPF1 | A: alpha arrays | X: RPB6/omega subunit-like (From Homology) | H: RPB6/omega subunit-like | T: RPB6 | F: PF01192 | ECOD (1.6) |
OB [auth PG] | PF00575 | e7encPG1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
OB [auth PG] | PF03876 | e7encPG2 | A: a+b two layers | X: Dodecin subunit-like | H: Flavin-binding protein dodecin-like (From Topology) | T: Flavin-binding protein dodecin-like | F: PF03876 | ECOD (1.6) |
PB [auth PH] | PF03870 | e7encPH1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF03870 | ECOD (1.6) |
QB [auth PI] | PF01096 | e7encPI2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01096 | ECOD (1.6) |
QB [auth PI] | PF02150 | e7encPI1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF02150 | ECOD (1.6) |
SB [auth PK] | PF13656 | e7encPK1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF13656 | ECOD (1.6) |
TB [auth PL] | PF03604 | e7encPL1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF03604 | ECOD (1.6) |
N [auth u] | PF11221 | e7encu1 | A: alpha duplicates or obligate multimers | X: Mediator hinge subcomplex-like (From Homology) | H: Mediator hinge subcomplex-like | T: RNA polymerase II holoenzyme component SRB7 (MED21) | F: PF11221 | ECOD (1.6) |
R [auth e] | PF11594 | e7ence1 | A: alpha duplicates or obligate multimers | X: Mediator hinge subcomplex-like (From Homology) | H: Mediator hinge subcomplex-like | T: RNA polymerase II holoenzyme component SRB7 (MED21) | F: PF11594 | ECOD (1.6) |
B [auth m] | PF05669 | e7encm1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | T: Mediator of RNA polymerase II transcription submodule Med7N/31 | F: PF05669 | ECOD (1.6) |
Y [auth 9] | PF00134 | e7enc91 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF00134 | ECOD (1.6) |
Y [auth 9] | PF16899 | e7enc92 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF16899 | ECOD (1.6) |
AA [auth 2] | PF04056 | e7enc22 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF04056 | ECOD (1.6) |
AA [auth 2] | F_UNCLASSIFIED | e7enc21 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
AA [auth 2] | PF07975 | e7enc23 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: Cysteine-rich domain | F: PF07975 | ECOD (1.6) |
DA [auth 5] | PF06331 | e7enc51 | A: a+b complex topology | X: TFB5-related (From Topology) | H: TFB5-related (From Topology) | T: TFB5-related | F: PF06331 | ECOD (1.6) |
FA [auth 7] | PF06777 | e7enc73 | A: a+b two layers | X: XPD arch domain (From Topology) | H: XPD arch domain (From Topology) | T: XPD arch domain | F: PF06777 | ECOD (1.6) |
FA [auth 7] | PF06733 | e7enc71 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF06733 | ECOD (1.6) |
FA [auth 7] | PF13307 | e7enc72 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13307 | ECOD (1.6) |
GA [auth EA] | PF02002 | e7encEA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF02002 | ECOD (1.6) |
GA [auth EA] | PF08271 | e7encEA1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF08271 | ECOD (1.6) |
HA [auth EB] | F_UNCLASSIFIED | e7encEB1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: F_UNCLASSIFIED | ECOD (1.6) |
HA [auth EB] | PF02186 | e7encEB3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF02186 | ECOD (1.6) |
HA [auth EB] | PF18121 | e7encEB2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF18121 | ECOD (1.6) |
JA [auth DB] | F_UNCLASSIFIED | e7encDB2 | A: beta sandwiches | X: Baculovirus p35 protein-related (From Topology) | H: Baculovirus p35 protein-related (From Topology) | T: Baculovirus p35 protein-related | F: F_UNCLASSIFIED | ECOD (1.6) |
JA [auth DB] | F_UNCLASSIFIED | e7encDB3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
JA [auth DB] | F_UNCLASSIFIED | e7encDB1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: F_UNCLASSIFIED | ECOD (1.6) |
QA [auth DJ] | PF03540 | e7encDJ1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF03540 | ECOD (1.6) |
XA [auth Dj] | PF03540 | e7encDj1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF03540 | ECOD (1.6) |
RA [auth DL] | PF03847 | e7encDL1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF03847 | ECOD (1.6) |
YA [auth Dk] | PF04719 | e7encDk1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF04719 | ECOD (1.6) |
CB [auth DP] | PF00352 | e7encDP2 | A: a+b two layers | X: TBP-like | H: TATA-box binding protein-like (From Topology) | T: TATA-box binding protein-like | F: PF00352 | ECOD (1.6) |
E [auth g] | PF05983 | e7encg2 | A: alpha duplicates or obligate multimers | X: Mediator hinge subcomplex-like (From Homology) | H: Mediator hinge subcomplex-like | T: MED7 hinge region | F: PF05983 | ECOD (1.6) |
E [auth g] | F_UNCLASSIFIED | e7encg1 | A: a+b complex topology | X: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | H: Mediator of RNA polymerase II transcription submodule Med7N/31 (From Topology) | T: Mediator of RNA polymerase II transcription submodule Med7N/31 | F: F_UNCLASSIFIED | ECOD (1.6) |
DB [auth DQ] | PF03153 | e7encDQ1 | A: beta duplicates or obligate multimers | X: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | H: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | T: Transcription factor IIA (TFIIA), beta-barrel domain | F: PF03153 | ECOD (1.6) |
DB [auth DQ] | PF03153 | e7encDQ2 | A: alpha duplicates or obligate multimers | X: TFIIA, alpha-helical domain (From Topology) | H: TFIIA, alpha-helical domain (From Topology) | T: TFIIA, alpha-helical domain | F: PF03153 | ECOD (1.6) |
EB [auth BA] | PF00382 | e7encBA3 | A: alpha arrays | X: HTH | H: HTH | T: Cyclin-like | F: PF00382 | ECOD (1.6) |
EB [auth BA] | PF08271 | e7encBA1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF08271 | ECOD (1.6) |
JB [auth PB] | PF00562 | e7encPB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00562 | ECOD (1.6) |
JB [auth PB] | PF00562 | e7encPB6 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PF00562 | ECOD (1.6) |
JB [auth PB] | PF04563,PF04565 | e7encPB3 | A: a+b complex topology | X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF04563,PF04565 | ECOD (1.6) |
JB [auth PB] | PF04561 | e7encPB4 | A: a+b complex topology | X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: insertion domain in beta subunit of DNA dependent RNA-polymerase | F: PF04561 | ECOD (1.6) |
JB [auth PB] | PF00562,PF04567 | e7encPB5 | A: a+b complex topology | X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: barrel domain in beta subunit of DNA dependent RNA-polymerase | F: PF00562,PF04567 | ECOD (1.6) |
JB [auth PB] | PF00562,PF04560 | e7encPB7 | A: a+b complex topology | X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF00562,PF04560 | ECOD (1.6) |
JB [auth PB] | PF04566 | e7encPB2 | A: a+b complex topology | X: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology) | H: inserted a+b domain in yeast RNA polymerase beta subunit (From Topology) | T: inserted a+b domain in yeast RNA polymerase beta subunit | F: PF04566 | ECOD (1.6) |
KB [auth PC] | PF01193 | e7encPC2 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF01193 | ECOD (1.6) |
KB [auth PC] | PF01000 | e7encPC1 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: PF01000 | ECOD (1.6) |
MB [auth PE] | PF01191 | e7encPE1 | A: a+b two layers | X: RPB5-like RNA polymerase subunit (From Topology) | H: RPB5-like RNA polymerase subunit (From Topology) | T: RPB5-like RNA polymerase subunit | F: PF01191 | ECOD (1.6) |
MB [auth PE] | PF03871 | e7encPE2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Eukaryotic RPB5 N-terminal domain (From Topology) | T: Eukaryotic RPB5 N-terminal domain | F: PF03871 | ECOD (1.6) |
RB [auth PJ] | PF01194 | e7encPJ1 | A: alpha arrays | X: HTH | H: RPB10 (From Topology) | T: RPB10 | F: PF01194 | ECOD (1.6) |
UB [auth FA] | PF05793 | e7encFA1 | A: beta complex topology | X: triple barrel (From Homology) | H: triple barrel | T: Rap30/74 interaction domains-like | F: PF05793 | ECOD (1.6) |
G [auth r] | PF09637 | e7encr1 | A: a+b complex topology | X: mRNA triphosphatase CET1-related (From Topology) | H: mRNA triphosphatase CET1-related (From Topology) | T: mRNA triphosphatase CET1-related | F: PF09637 | ECOD (1.6) |
XB [auth p] | PF00400,PF11635 | e7encp1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400,PF11635 | ECOD (1.6) |
H [auth t] | PF08612 | e7enct1 | A: a+b complex topology | X: mRNA triphosphatase CET1-related (From Topology) | H: mRNA triphosphatase CET1-related (From Topology) | T: mRNA triphosphatase CET1-related | F: PF08612 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth f] | PF04934 | MED6 mediator sub complex component (Med6) | MED6 mediator sub complex component | - | Family |
K [auth n] | PF08638 | Mediator complex subunit MED14 (Med14) | Mediator complex subunit MED14 | - | Family |
M [auth s] | PF10278 | Mediator of RNA pol II transcription subunit 19 (Med19) | Mediator of RNA pol II transcription subunit 19 | - | Family |
O [auth v] | PF06179 | Surfeit locus protein 5 subunit 22 of Mediator complex (Med22) | Surfeit locus protein 5 subunit 22 of Mediator complex | - | Family |
P [auth z] | PF15693 | Mediator complex subunit 26 C-terminal (Med26_C) | Mediator complex subunit 26 C-terminal | Med26_C is the C-terminal domain of subunit 26 of the Mediator complex in eukaryotes. Med19 and Med26 act synergistically to mediate the interaction between REST (a Kruppel-type zinc finger transcription factor that binds to a 21-bp RE1 silencing ele ... | Domain |
S [auth b] | PF11568 | Mediator complex subunit 29 (Med29) | Mediator complex subunit 29 | - | Family |
T [auth l] | PF11315 | Mediator complex subunit 30 (Med30) | Mediator complex subunit 30 | Med30 is a metazoan-specific subunit of Mediator, having no homologues in yeasts. | Domain |
U [auth o] | PF21538 | ARC105/Med15 mediator subunit central domain (Med15_M) | ARC105/Med15 mediator subunit central domain | This domain is found in the Med15 subunit of the ARC-Mediator co-activator complex. | Domain |
W [auth 0] | PF17121 | Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_5) | Zinc finger, C3HC4 type (RING finger) | - | Domain |
W [auth 0] | PF06391 | CDK-activating kinase assembly factor MAT1 (MAT1) | CDK-activating kinase assembly factor MAT1 | - | Family |
X [auth 8] | PF00069 | Protein kinase domain (Pkinase) | Protein kinase domain | - | Domain |
BA [auth 3] | PF03850 | Transcription factor Tfb4 (Tfb4) | Transcription factor Tfb4 | This family appears to be distantly related to the VWA domain. | Domain |
EA [auth 6] | PF04851 | Type III restriction enzyme, res subunit (ResIII) | Type III restriction enzyme, res subunit | - | Family |
EA [auth 6] | PF16203 | ERCC3/RAD25/XPB C-terminal helicase (ERCC3_RAD25_C) | ERCC3/RAD25/XPB C-terminal helicase | This is the C-terminal helicase domain of ERCC3, RAD25 and XPB helicases [1]. | Domain |
KA [auth DD], TA [auth Dd] | PF05236 | Transcription initiation factor TFIID component TAF4 family (TAF4) | Transcription initiation factor TFIID component TAF4 family | - | Family |
LA [auth DE], UA [auth De] | PF04494 | WD40 associated region in TFIID subunit, NTD2 domain (TFIID_NTD2) | WD40 associated region in TFIID subunit, NTD2 domain | - | Family |
LA [auth DE], UA [auth De] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
MA [auth DF], VA [auth Df] | PF07571 | TAF6 C-terminal HEAT repeat domain (TAF6_C) | TAF6 C-terminal HEAT repeat domain | - | Repeat |
MA [auth DF], VA [auth Df] | PF02969 | TATA box binding protein associated factor (TAF) (TAF) | TATA box binding protein associated factor (TAF) | TAF proteins adopt a histone-like fold. | Domain |
PA [auth DI], WA [auth Di] | PF02291 | Transcription initiation factor IID, 31kD subunit (TFIID-31kDa) | Transcription initiation factor IID, 31kD subunit | This family represents the N-terminus of the 31kD subunit (42kD in drosophila) of transcription initiation factor IID (TAFII31). TAFII31 binds to p53, and is an essential requirement for p53 mediated transcription activation. | Domain |
AB [auth Dm] | PF02269 | Transcription initiation factor IID, 18kD subunit (TFIID-18kDa) | Transcription initiation factor IID, 18kD subunit | This family includes the Spt3 yeast transcription factors and the 18kD subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [1] | Domain |
BB [auth DO] | PF02751 | Transcription initiation factor IIA, gamma subunit (TFIIA_gamma_C) | Transcription initiation factor IIA, gamma subunit | Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA b ... | Domain |
BB [auth DO] | PF02268 | Transcription initiation factor IIA, gamma subunit, helical domain (TFIIA_gamma_N) | Transcription initiation factor IIA, gamma subunit, helical domain | Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA ... | Domain |
LB [auth PD] | PF03874 | RNA polymerase Rpb4 (RNA_pol_Rpb4) | RNA polymerase Rpb4 | - | Family |
NB [auth PF] | PF01192 | RNA polymerase Rpb6 (RNA_pol_Rpb6) | RNA polymerase Rpb6 | - | Family |
OB [auth PG] | PF03876 | SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 (SHS2_Rpb7-N) | SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 | Rpb7 bind to Rpb4 to form a heterodimer. This complex is thought to interact with the nascent RNA strand during RNA polymerase II elongation[1]. This family includes the homologs from RNA polymerase I and III. In RNA polymerase I, Rpa43 is at leas ... | Domain |
OB [auth PG] | PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain |
PB [auth PH] | PF03870 | RNA polymerase Rpb8 (RNA_pol_Rpb8) | RNA polymerase Rpb8 | - | Family |
QB [auth PI] | PF02150 | RNA polymerases M/15 Kd subunit (RNA_POL_M_15KD) | RNA polymerases M/15 Kd subunit | - | Domain |
QB [auth PI] | PF01096 | Transcription factor S-II (TFIIS) (TFIIS_C) | Transcription factor S-II (TFIIS) | - | Domain |
SB [auth PK] | PF01193 | RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) | RNA polymerase Rpb3/Rpb11 dimerisation domain | The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ... | Domain |
SB [auth PK] | PF13656 | RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L_2) | RNA polymerase Rpb3/Rpb11 dimerisation domain | The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ... | Domain |
TB [auth PL] | PF03604 | DNA directed RNA polymerase, 7 kDa subunit (DNA_RNApol_7kD) | DNA directed RNA polymerase, 7 kDa subunit | - | Domain |
VB [auth w] | PF11573 | Mediator complex subunit 23 (Med23) | Mediator complex subunit 23 | - | Family |
WB [auth x] | PF11277 | Mediator complex subunit 24 N-terminal (Med24_N) | Mediator complex subunit 24 N-terminal | - | Family |
A [auth a] | PF10744 | Mediator of RNA polymerase II transcription subunit 1 (Med1) | Mediator of RNA polymerase II transcription subunit 1 | Mediator complexes are basic necessities for linking transcriptional regulators to RNA polymerase II. This domain, Med1, is conserved from plants to fungi to humans and forms part of the Med9 submodule of the Srb/Med complex. it is one of three subu ... | Domain |
J [auth k] | PF10280 | Mediator complex protein (Med11) | Mediator complex protein | - | Family |
L [auth q] | PF10156 | Subunit 17 of Mediator complex (Med17) | Subunit 17 of Mediator complex | - | Family |
N [auth u] | PF11221 | Subunit 21 of Mediator complex (Med21) | Subunit 21 of Mediator complex | - | Family |
Q [auth c] | PF11571 | Mediator complex subunit 27 (Med27) | Mediator complex subunit 27 | - | Family |
R [auth e] | PF11594 | Mediator complex subunit 28 (Med28) | Mediator complex subunit 28 | - | Family |
B [auth m] | PF05669 | SOH1 (Med31) | SOH1 | - | Family |
V [auth i] | PF07544 | RNA polymerase II transcription mediator complex subunit 9 (Med9) | RNA polymerase II transcription mediator complex subunit 9 | - | Family |
Y [auth 9] | PF16899 | Cyclin C-terminal domain (Cyclin_C_2) | Cyclin C-terminal domain | Cyclins contain two domains of similar all-alpha fold, this family corresponds with the C-terminal domain of some cyclins including cyclin C and cyclin H [1]. | Domain |
Y [auth 9] | PF00134 | Cyclin, N-terminal domain (Cyclin_N) | Cyclin, N-terminal domain | Cyclins regulate cyclin dependent kinases (CDKs). Swiss:P22674 is a Uracil-DNA glycosylase that is related to other cyclins [4]. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. | Domain |
AA [auth 2] | PF04056 | Ssl1-like (Ssl1) | Ssl1-like | - | Family |
AA [auth 2] | PF07975 | TFIIH C1-like domain (C1_4) | TFIIH C1-like domain | The carboxyl-terminal region of TFIIH is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD ... | Domain |
CA [auth 4] | PF03849 | Transcription factor Tfb2 (Tfb2) | Transcription factor Tfb2 | - | Family |
CA [auth 4] | PF18307 | Transcription factor Tfb2 (p52) C-terminal domain (Tfb2_C) | Transcription factor Tfb2 (p52) C-terminal domain | This is the C-terminal domain of Transcription factor Tfb2 present in Saccharomyces cerevisiae. Tfb2 is referred to as p52 in humans. The interaction between p8-Tfb5 and p52-Tfb2 has a key role in the maintenance of the transcription factor TFIIH arc ... | Domain |
C [auth d] | PF10018 | Vitamin-D-receptor interacting Mediator subunit 4 (Med4) | Vitamin-D-receptor interacting Mediator subunit 4 | - | Family |
DA [auth 5] | PF06331 | Transcription factor TFIIH complex subunit Tfb5 (Tfb5) | Transcription factor TFIIH complex subunit Tfb5 | - | Family |
FA [auth 7] | PF13307 | Helicase C-terminal domain (Helicase_C_2) | Helicase C-terminal domain | This domain is found at the C-terminus of DEAD-box helicases. | Domain |
FA [auth 7] | PF06733 | DEAD_2 (DEAD_2) | DEAD_2 | - | Family |
FA [auth 7] | PF06777 | Helical and beta-bridge domain (HBB) | Helical and beta-bridge domain | HBB is the domain on DEAD-box eukaryotic DNA repair helicases (EC:3.6.1.-) that appears to be a unique fold. It's conformation is of alpha-helices 12-16 plus a short beta-bridge to the FeS-cluster domain at the N-terminal. The full-length XPD protein ... | Domain |
GA [auth EA] | PF08271 | TFIIB zinc-binding (TF_Zn_Ribbon) | TFIIB zinc-binding | The transcription factor TFIIB contains a zinc-binding motif near the N-terminus. This domain is involved in the interaction with RNA pol II and TFIIF and plays a crucial role in selecting the transcription initiation site. The domain adopts a zinc ... | Domain |
GA [auth EA] | PF02002 | TFIIE alpha subunit (TFIIE_alpha) | TFIIE alpha subunit | - | Family |
HA [auth EB] | PF18121 | TFA2 Winged helix domain 2 (TFA2_Winged_2) | TFA2 Winged helix domain 2 | This is the second winged helix domain can be found in TFA2 proteins present in Saccharomyces cerevisiae. In form 2, the domain interacts directly with Rad3, a DNA helicase [1]. | Domain |
HA [auth EB] | PF02186 | TFIIE beta subunit core domain (TFIIE_beta) | TFIIE beta subunit core domain | General transcription factor TFIIE consists of two subunits, TFIIE alpha Pfam:PF02002 and TFIIE beta. TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymer ... | Domain |
NA [auth DG] | PF04658 | TAFII55 protein conserved region (TAFII55_N) | TAFII55 protein conserved region | - | Family |
OA [auth DH] | PF07524 | Bromodomain associated (Bromo_TP) | Bromodomain associated | This domain is predicted to bind DNA [1] and is often found associated with Pfam:PF00439 and in transcription factors. It has a histone-like fold. | Domain |
OA [auth DH] | PF10406 | Transcription factor TFIID complex subunit 8 C-term (TAF8_C) | Transcription factor TFIID complex subunit 8 C-term | This is the C-terminal, Delta, part of the TAF8 protein [1]. The N-terminal is generally the histone fold domain, Bromo_TP (Pfam:PF07524). TAF8 is one of the key subunits of the transcription factor for pol II, TFIID. TAF8 is one of the several gener ... | Domain |
QA [auth DJ], XA [auth Dj] | PF03540 | Transcription initiation factor TFIID 23-30kDa subunit (TFIID_30kDa) | Transcription initiation factor TFIID 23-30kDa subunit | - | Family |
RA [auth DL], ZA [auth Dl] | PF03847 | Transcription initiation factor TFIID subunit A (TFIID_20kDa) | Transcription initiation factor TFIID subunit A | - | Domain |
SA [auth Dc] | PF07524 | Bromodomain associated (Bromo_TP) | Bromodomain associated | This domain is predicted to bind DNA [1] and is often found associated with Pfam:PF00439 and in transcription factors. It has a histone-like fold. | Domain |
YA [auth Dk] | PF04719 | hTAFII28-like protein conserved region (TAFII28) | hTAFII28-like protein conserved region | The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region ... | Domain |
CB [auth DP] | PF00352 | Transcription factor TFIID (or TATA-binding protein, TBP) (TBP) | Transcription factor TFIID (or TATA-binding protein, TBP) | - | Domain |
E [auth g] | PF05983 | MED7 protein (Med7) | MED7 protein | - | Family |
EB [auth BA] | PF00382 | Transcription factor TFIIB repeat (TFIIB) | Transcription factor TFIIB repeat | - | Domain |
PF02270 | TFIIF, beta subunit HTH domain (TFIIF_beta) | TFIIF, beta subunit HTH domain | Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIF (TFIIF) is a tetramer of two beta subunits associate with two alpha subunits which ... | Domain | |
PF17683 | TFIIF, beta subunit N-terminus (TFIIF_beta_N) | TFIIF, beta subunit N-terminus | - | Family | |
JB [auth PB] | PF04561 | RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2) | RNA polymerase Rpb2, domain 2 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ... | Domain |
JB [auth PB] | PF04560 | RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7) | RNA polymerase Rpb2, domain 7 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ... | Domain |
JB [auth PB] | PF04565 | RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3) | RNA polymerase Rpb2, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ... | Domain |
JB [auth PB] | PF04566 | RNA polymerase Rpb2, domain 4 (RNA_pol_Rpb2_4) | RNA polymerase Rpb2, domain 4 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain ... | Domain |
JB [auth PB] | PF04563 | RNA polymerase beta subunit (RNA_pol_Rpb2_1) | RNA polymerase beta subunit | - | Family |
JB [auth PB] | PF00562 | RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6) | RNA polymerase Rpb2, domain 6 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ... | Domain |
JB [auth PB] | PF04567 | RNA polymerase Rpb2, domain 5 (RNA_pol_Rpb2_5) | RNA polymerase Rpb2, domain 5 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain ... | Domain |
KB [auth PC] | PF01193 | RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) | RNA polymerase Rpb3/Rpb11 dimerisation domain | The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ... | Domain |
KB [auth PC] | PF01000 | RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) | RNA polymerase Rpb3/RpoA insert domain | Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal | Domain |
MB [auth PE] | PF01191 | RNA polymerase Rpb5, C-terminal domain (RNA_pol_Rpb5_C) | RNA polymerase Rpb5, C-terminal domain | The assembly domain of Rpb5 [1]. The archaeal equivalent to this domain is subunit H. Subunit H lacks the N-terminal domain. | Domain |
MB [auth PE] | PF03871 | RNA polymerase Rpb5, N-terminal domain (RNA_pol_Rpb5_N) | RNA polymerase Rpb5, N-terminal domain | Rpb5 has a bipartite structure which includes a eukaryote-specific N-terminal domain and a C-terminal domain resembling the archaeal RNAP subunit H [1,2]. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA p ... | Domain |
F [auth h] | PF10232 | Mediator of RNA polymerase II transcription complex subunit 8 (Med8) | Mediator of RNA polymerase II transcription complex subunit 8 | - | Family |
UB [auth FA] | PF05793 | Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) (TFIIF_alpha) | Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | - | Family |
G [auth r] | PF09637 | Med18 protein (Med18) | Med18 protein | Med18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Me ... | Domain |
XB [auth p] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
H [auth t] | PF08612 | TATA-binding related factor (TRF) of subunit 20 of Mediator complex (Med20) | TATA-binding related factor (TRF) of subunit 20 of Mediator complex | - | Family |
I [auth j] | PF09748 | Transcription factor subunit Med10 of Mediator complex (Med10) | Transcription factor subunit Med10 of Mediator complex | - | Family |