7AGX

Apo-state type 3 secretion system export apparatus complex from Salmonella enterica typhimurium

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
AA [auth 2K]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
BA [auth 2L]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
CA [auth 2M]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
V [auth 2F]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
W [auth 2G]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
X [auth 2H]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
Y [auth 2I]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)
Z [auth 2J]	SCOP2B Superfamily	Type III secretion system needle-like	8074333	3000649	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K [auth 1K]	F_UNCLASSIFIED	e7agx1K1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: F_UNCLASSIFIED	ECOD (1.6)
L [auth 1L]	F_UNCLASSIFIED	e7agx1L1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: F_UNCLASSIFIED	ECOD (1.6)
M [auth 1M]	F_UNCLASSIFIED	e7agx1M1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: F_UNCLASSIFIED	ECOD (1.6)
N [auth 1N]	F_UNCLASSIFIED	e7agx1N1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: F_UNCLASSIFIED	ECOD (1.6)
O [auth 1O]	F_UNCLASSIFIED	e7agx1O1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: F_UNCLASSIFIED	ECOD (1.6)
P [auth 1P]	F_UNCLASSIFIED	e7agx1P1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: F_UNCLASSIFIED	ECOD (1.6)
AA [auth 2K]	PF09392	e7agx2K1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
BA [auth 2L]	PF09392	e7agx2L1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
CA [auth 2M]	PF09392	e7agx2M1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
DA [auth 2N]	PF09392	e7agx2N1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
EA [auth 2O]	PF09392	e7agx2O1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
FA [auth 2P]	PF09392	e7agx2P1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
Q [auth 2A]	PF09392	e7agx2A1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
R [auth 2B]	PF09392	e7agx2B1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
S [auth 2C]	PF09392	e7agx2C1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
T [auth 2D]	PF09392	e7agx2D1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
U [auth 2E]	PF09392	e7agx2E1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
V [auth 2F]	PF09392	e7agx2F1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
W [auth 2G]	PF09392	e7agx2G1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
X [auth 2H]	PF09392	e7agx2H1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
Y [auth 2I]	PF09392	e7agx2I1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)
Z [auth 2J]	PF09392	e7agx2J1	A: alpha bundles	X: Long alpha-hairpin	H: MxiH-like (From Topology)	T: MxiH-like	F: PF09392	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E]	PF00813	FliP family (FliP)	FliP family	-	Family
F [auth 1F]	PF01311	Bacterial export proteins, family 1 (Bac_export_1)	Bacterial export proteins, family 1	-	Family
G [auth 1G], H [auth 1H], I [auth 1I], J [auth 1J]	PF01313	Bacterial export proteins, family 3 (Bac_export_3)	Bacterial export proteins, family 3	-	Family
AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], FA [auth 2P], GA [auth 2Q], Q [auth 2A], R [auth 2B], S [auth 2C], T [auth 2D], U [auth 2E], V [auth 2F], W [auth 2G], X [auth 2H], Y [auth 2I], Z [auth 2J]	PF09392	Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF (T3SS_needle_F)	Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E]	Surface presentation of antigens protein SpaP	-	protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport cellular macromolecule localization macromolecule localization cellular process	cell periphery plasma membrane membrane cellular anatomical entity
F [auth 1F]	Surface presentation of antigens protein SpaR	-	protein localization localization establishment of protein localization cellular localization protein targeting cellular macromolecule localization macromolecule localization cellular process establishment of localization	cell periphery plasma membrane membrane cellular anatomical entity
G [auth 1G], H [auth 1H], I [auth 1I], J [auth 1J]	Surface presentation of antigens protein SpaQ	-	protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport cellular macromolecule localization macromolecule localization cellular process	cell periphery plasma membrane membrane cellular anatomical entity
K [auth 1K], L [auth 1L], M [auth 1M], N [auth 1N], O [auth 1O], K [auth 1K], L [auth 1L], M [auth 1M], N [auth 1N], O [auth 1O], P [auth 1P]	Protein PrgJ	-	protein localization establishment of protein localization cellular localization nitrogen compound transport transport organic substance transport establishment of localization localization protein transport cellular macromolecule localization macromolecule localization cellular process	-
AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], FA [auth 2P], GA [auth 2Q], Q [auth 2A], R [auth 2B], S [auth 2C], T [auth 2D], U [auth 2E], V [auth 2F], W [auth 2G], X [auth 2H], Y [auth 2I], Z [auth 2J]	Protein PrgI	identical protein binding protein binding binding	protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport protein secretion by the type III secretion system establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization protein localization establishment of protein localization cellular localization nitrogen compound transport transport secretion organic substance transport protein secretion by the type III secretion system establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport cellular macromolecule localization macromolecule localization cellular process	cell surface cellular anatomical entity extracellular region protein-containing complex type III protein secretion system complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E]	IPR005838	Type III secretion system inner membrane P protein	Family
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E]	IPR005773	Type III secretion system, Yop virulence translocation protein R-like	Family
F [auth 1F]	IPR002010	Type III secretion system inner membrane R protein	Family
F [auth 1F]	IPR006304	Type III secretion protein SpaR/YscT	Family
G [auth 1G], H [auth 1H], I [auth 1I], J [auth 1J]	IPR006306	Type III secretion protein HrpO	Family
G [auth 1G], H [auth 1H], I [auth 1I], J [auth 1J]	IPR002191	Bacterial export protein family 3	Family
K [auth 1K], L [auth 1L], M [auth 1M], N [auth 1N], O [auth 1O], K [auth 1K], L [auth 1L], M [auth 1M], N [auth 1N], O [auth 1O], P [auth 1P]	IPR047754	T3SS inner rod subunit SctI-like	Family
AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], FA [auth 2P], GA [auth 2Q], Q [auth 2A], R [auth 2B], S [auth 2C], T [auth 2D], U [auth 2E], V [auth 2F], W [auth 2G], X [auth 2H], Y [auth 2I], Z [auth 2J]	IPR037203	Type III secretion, needle-protein-like superfamily	Homologous Superfamily
AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], FA [auth 2P], GA [auth 2Q], Q [auth 2A], R [auth 2B], S [auth 2C], T [auth 2D], U [auth 2E], V [auth 2F], W [auth 2G], X [auth 2H], Y [auth 2I], Z [auth 2J]	IPR021123	Type III secretion, needle-protein-like	Family
AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], AA [auth 2K], BA [auth 2L], CA [auth 2M], DA [auth 2N], EA [auth 2O], FA [auth 2P], GA [auth 2Q], Q [auth 2A], R [auth 2B], S [auth 2C], T [auth 2D], U [auth 2E], V [auth 2F], W [auth 2G], X [auth 2H], Y [auth 2I], Z [auth 2J]	IPR011841	Type III secretion system, needle protein	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E] A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E], F [auth 1F], G [auth 1G], H [auth 1H], I [auth 1I], J [auth 1J]	OPM	Transmembrane	Alpha-helical polytopic	Type III secretory pathway	FliP family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E] A [auth 1A], B [auth 1B], C [auth 1C], D [auth 1D], E [auth 1E], F [auth 1F], G [auth 1G], H [auth 1H], I [auth 1I], J [auth 1J]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type III Secretion Systems	type III secretion system export apparatus, apo state