6TQO
rrn anti-termination complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth T] | SCOP2B Superfamily | Carbohydrate phosphatase-like | 8066099 | 3001721 | SCOP2B (2022-06-29) |
L [auth C] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2022-06-29) |
B [auth S] | SCOP2B Superfamily | Carbohydrate phosphatase-like | 8066099 | 3001721 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Rad51 N-terminal domain-like | 8040765 | 3000529 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | NusB-like | 8038005 | 3000679 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | N-utilization substance G protein NusG N-terminal domain | 8080353 | 3000474 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8080349 | 3000334 | SCOP2B (2022-06-29) |
G [auth U] | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8037279 | 3001500 | SCOP2B (2022-06-29) |
G [auth U] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8035907 | 3001655 | SCOP2B (2022-06-29) |
G [auth U] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8035907 | 3001655 | SCOP2B (2022-06-29) |
G [auth U] | SCOP2B Superfamily | C-terminal domain of RNA polymerase alpha subunit | 8042964 | 3000519 | SCOP2B (2022-06-29) |
H [auth V] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8035907 | 3001655 | SCOP2B (2022-06-29) |
H [auth V] | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8037279 | 3001500 | SCOP2B (2022-06-29) |
H [auth V] | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8035907 | 3001655 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth T] | PF00459 | e6tqoT2 | A: a+b two layers | X: a+b domain in carbohydrate phosphatases (From Topology) | H: a+b domain in carbohydrate phosphatases (From Topology) | T: a+b domain in carbohydrate phosphatases | F: PF00459 | ECOD (1.6) |
A [auth T] | PF00459 | e6tqoT1 | A: a/b three-layered sandwiches | X: Rossmann-like domain in carbohydrate phosphatases (From Homology) | H: Rossmann-like domain in carbohydrate phosphatases | T: Rossmann-like domain in carbohydrate phosphatases | F: PF00459 | ECOD (1.6) |
K [auth Y] | PF00623 | e6tqoY7 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00623 | ECOD (1.6) |
K [auth Y] | F_UNCLASSIFIED | e6tqoY8 | A: a+b two layers | X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth Y] | F_UNCLASSIFIED | e6tqoY2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth Y] | PF04997 | e6tqoY6 | A: a+b complex topology | X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | T: N-terminal domain in RNA-polymerase beta-prime subunit | F: PF04997 | ECOD (1.6) |
K [auth Y] | PF04998 | e6tqoY9 | A: a+b complex topology | X: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: central helical domain in RNA-polymerase beta-prime subunit | F: PF04998 | ECOD (1.6) |
K [auth Y] | PF04998,PF05000 | e6tqoY3 | A: a+b complex topology | X: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: second helical domain in RNA-polymerase beta-prime subunit | F: PF04998,PF05000 | ECOD (1.6) |
K [auth Y] | PF04983 | e6tqoY4 | A: a+b complex topology | X: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: first helical domain in RNA-polymerase beta-prime subunit | F: PF04983 | ECOD (1.6) |
L [auth C] | PF00163,PF01479 | e6tqoC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
B [auth S] | PF00459 | e6tqoS2 | A: a+b two layers | X: a+b domain in carbohydrate phosphatases (From Topology) | H: a+b domain in carbohydrate phosphatases (From Topology) | T: a+b domain in carbohydrate phosphatases | F: PF00459 | ECOD (1.6) |
B [auth S] | PF00459 | e6tqoS1 | A: a/b three-layered sandwiches | X: Rossmann-like domain in carbohydrate phosphatases (From Homology) | H: Rossmann-like domain in carbohydrate phosphatases | T: Rossmann-like domain in carbohydrate phosphatases | F: PF00459 | ECOD (1.6) |
C [auth A] | PF00575 | e6tqoA1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
C [auth A] | F_UNCLASSIFIED | e6tqoA6 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth A] | PF14520 | e6tqoA5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF14520 | ECOD (1.6) |
C [auth A] | F_UNCLASSIFIED | e6tqoA4 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth A] | PF13184 | e6tqoA3 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF13184 | ECOD (1.6) |
C [auth A] | PF08529 | e6tqoA2 | A: a+b complex topology | X: Transcription factor NusA, N-terminal domain (From Topology) | H: Transcription factor NusA, N-terminal domain (From Topology) | T: Transcription factor NusA, N-terminal domain | F: PF08529 | ECOD (1.6) |
D [auth B] | PF01029 | e6tqoB1 | A: alpha complex topology | X: NusB-like (From Topology) | H: NusB-like (From Topology) | T: NusB-like | F: PF01029 | ECOD (1.6) |
E | PF00338 | e6tqoE1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
F [auth G] | PF00467 | e6tqoG2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467 | ECOD (1.6) |
F [auth G] | PF02357 | e6tqoG1 | A: a+b two layers | X: Alpha-beta plaits | H: N-utilization substance G protein NusG, N-terminal domain (From Topology) | T: N-utilization substance G protein NusG, N-terminal domain | F: PF02357 | ECOD (1.6) |
G [auth U] | PF03118 | e6tqoU2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF03118 | ECOD (1.6) |
G [auth U] | PF01193 | e6tqoU1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF01193 | ECOD (1.6) |
G [auth U] | PF01000 | e6tqoU3 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: PF01000 | ECOD (1.6) |
H [auth V] | PF01193 | e6tqoV2 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF01193 | ECOD (1.6) |
H [auth V] | PF01000 | e6tqoV1 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: PF01000 | ECOD (1.6) |
I [auth W] | PF01192 | e6tqoW1 | A: alpha arrays | X: RPB6/omega subunit-like (From Homology) | H: RPB6/omega subunit-like | T: RNA polymerase omega subunit | F: PF01192 | ECOD (1.6) |
J [auth X] | PF00562 | e6tqoX8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00562 | ECOD (1.6) |
J [auth X] | F_UNCLASSIFIED | e6tqoX10 | A: a+b two layers | X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth X] | PF00562 | e6tqoX3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PF00562 | ECOD (1.6) |
J [auth X] | F_UNCLASSIFIED | e6tqoX2 | A: a+b complex topology | X: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit (From Topology) | H: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit (From Topology) | T: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth X] | PF04563,PF04565 | e6tqoX9 | A: a+b complex topology | X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF04563,PF04565 | ECOD (1.6) |
J [auth X] | PF04561 | e6tqoX6 | A: a+b complex topology | X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: insertion domain in beta subunit of DNA dependent RNA-polymerase | F: PF04561 | ECOD (1.6) |
J [auth X] | PF10385 | e6tqoX1 | A: a+b complex topology | X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: barrel domain in beta subunit of DNA dependent RNA-polymerase | F: PF10385 | ECOD (1.6) |
J [auth X] | PF00562,PF04560 | e6tqoX5 | A: a+b complex topology | X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF00562,PF04560 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth T] | PF00459 | Inositol monophosphatase family (Inositol_P) | Inositol monophosphatase family | - | Family |
K [auth Y] | PF00623 | RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) | RNA polymerase Rpb1, domain 2 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site ... | Domain |
K [auth Y] | PF05000 | RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) | RNA polymerase Rpb1, domain 4 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ... | Domain |
K [auth Y] | PF04983 | RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) | RNA polymerase Rpb1, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ... | Domain |
K [auth Y] | PF04998 | RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) | RNA polymerase Rpb1, domain 5 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ... | Domain |
K [auth Y] | PF04997 | RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) | RNA polymerase Rpb1, domain 1 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp do ... | Domain |
L [auth C] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
L [auth C] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
B [auth S] | PF00459 | Inositol monophosphatase family (Inositol_P) | Inositol monophosphatase family | - | Family |
C [auth A] | PF13184 | NusA-like KH domain (KH_5) | NusA-like KH domain | - | Domain |
C [auth A] | PF14520 | Helix-hairpin-helix domain (HHH_5) | Helix-hairpin-helix domain | - | Domain |
C [auth A] | PF08529 | NusA N-terminal domain (NusA_N) | NusA N-terminal domain | This domain represents the RNA polymerase binding domain of NusA. | Domain |
C [auth A] | PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain |
D [auth B] | PF01029 | NusB family (NusB) | NusB family | The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination. | Domain |
PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain | |
F [auth G] | PF02357 | Transcription termination factor nusG (NusG) | Transcription termination factor nusG | - | Domain |
F [auth G] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
G [auth U], H [auth V] | PF01193 | RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) | RNA polymerase Rpb3/Rpb11 dimerisation domain | The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ... | Domain |
G [auth U], H [auth V] | PF01000 | RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) | RNA polymerase Rpb3/RpoA insert domain | Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal | Domain |
G [auth U], H [auth V] | PF03118 | Bacterial RNA polymerase, alpha chain C terminal domain (RNA_pol_A_CTD) | Bacterial RNA polymerase, alpha chain C terminal domain | The alpha subunit of RNA polymerase consists of two independently folded domains, referred to as amino-terminal and carboxyl terminal domains. The amino terminal domain is involved in the interaction with the other subunits of the RNA polymerase. T ... | Domain |
I [auth W] | PF01192 | RNA polymerase Rpb6 (RNA_pol_Rpb6) | RNA polymerase Rpb6 | - | Family |
J [auth X] | PF04561 | RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2) | RNA polymerase Rpb2, domain 2 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ... | Domain |
J [auth X] | PF10385 | RNA polymerase beta subunit external 1 domain (RNA_pol_Rpb2_45) | RNA polymerase beta subunit external 1 domain | RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between ... | Domain |
J [auth X] | PF04560 | RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7) | RNA polymerase Rpb2, domain 7 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ... | Domain |
J [auth X] | PF04565 | RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3) | RNA polymerase Rpb2, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ... | Domain |
J [auth X] | PF04563 | RNA polymerase beta subunit (RNA_pol_Rpb2_1) | RNA polymerase beta subunit | - | Family |
J [auth X] | PF00562 | RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6) | RNA polymerase Rpb2, domain 6 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ... | Domain |