6QTK
2.31A structure of gepotidacin with S.aureus DNA gyrase and doubly nicked DNA
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | DNA_gyraseB_C | e6qtkB1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: DNA_gyraseB_C | ECOD (1.6) |
C [auth D] | DNA_gyraseB_C | e6qtkD1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: DNA_gyraseB_C | ECOD (1.6) |
B [auth A] | DNA_topoisoIV_1st | e6qtkA2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: DNA_topoisoIV_1st | ECOD (1.6) |
B [auth A] | DNA_topoisoIV_3rd | e6qtkA3 | A: alpha bundles | X: alpha-helical domain in type II DNA topoisomerase (From Topology) | H: alpha-helical domain in type II DNA topoisomerase (From Topology) | T: alpha-helical domain in type II DNA topoisomerase | F: DNA_topoisoIV_3rd | ECOD (1.6) |
B [auth A] | DNA_topoisoIV_2nd_1 | e6qtkA1 | A: a+b two layers | X: a+b domain in type II DNA topoisomerase (From Topology) | H: a+b domain in type II DNA topoisomerase (From Topology) | T: a+b domain in type II DNA topoisomerase | F: DNA_topoisoIV_2nd_1 | ECOD (1.6) |
D [auth C] | DNA_topoisoIV_1st | e6qtkC3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: DNA_topoisoIV_1st | ECOD (1.6) |
D [auth C] | DNA_topoisoIV_3rd | e6qtkC1 | A: alpha bundles | X: alpha-helical domain in type II DNA topoisomerase (From Topology) | H: alpha-helical domain in type II DNA topoisomerase (From Topology) | T: alpha-helical domain in type II DNA topoisomerase | F: DNA_topoisoIV_3rd | ECOD (1.6) |
D [auth C] | DNA_topoisoIV_2nd_1 | e6qtkC2 | A: a+b two layers | X: a+b domain in type II DNA topoisomerase (From Topology) | H: a+b domain in type II DNA topoisomerase (From Topology) | T: a+b domain in type II DNA topoisomerase | F: DNA_topoisoIV_2nd_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], C [auth D] | PF00986 | DNA gyrase B subunit, carboxyl terminus (DNA_gyraseB_C) | DNA gyrase B subunit, carboxyl terminus | - | Family |
A [auth B], C [auth D] | PF01751 | Toprim domain (Toprim) | Toprim domain | - | Family |
B [auth A], D [auth C] | PF00521 | DNA gyrase/topoisomerase IV, subunit A (DNA_topoisoIV) | DNA gyrase/topoisomerase IV, subunit A | - | Family |