6P66
The crystal structure of the XPB complex with Bax1 from Archaeoglobus fulgidus at 3.0 Angstrom resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6p66a1 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Tandem AAA-ATPase domain | automated matches | (Archaeoglobus fulgidus DSM 4304 ) [TaxId: 224325 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF18458 | e6p66A1 | A: a+b two layers | X: DNA helicase UvsW N-terminal a+b domain-related (From Topology) | H: DNA helicase UvsW N-terminal a+b domain-related (From Topology) | T: DNA helicase UvsW N-terminal a+b domain-related | F: PF18458 | ECOD (1.6) |
A | PF00271 | e6p66A2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00271 | ECOD (1.6) |
A | PF04851 | e6p66A3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF04851 | ECOD (1.6) |
C | PF18458 | e6p66C2 | A: a+b two layers | X: DNA helicase UvsW N-terminal a+b domain-related (From Topology) | H: DNA helicase UvsW N-terminal a+b domain-related (From Topology) | T: DNA helicase UvsW N-terminal a+b domain-related | F: PF18458 | ECOD (1.6) |
C | PF00271 | e6p66C1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00271 | ECOD (1.6) |
C | PF04851 | e6p66C3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF04851 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain | |
PF18458 | Xeroderma pigmentosum group B helicase damage recognition domain (XPB_DRD) | Xeroderma pigmentosum group B helicase damage recognition domain | This domain is found in the N-terminal region of xeroderma pigmentosum group B (XPB) helicase present in Archaeoglobus fulgidus. XPB is essential for transcription, nucleotide excision repair, and TFIIH functional assembly. The domain is a damage rec ... | Domain | |
PF04851 | Type III restriction enzyme, res subunit (ResIII) | Type III restriction enzyme, res subunit | - | Family | |
PF05626 | Protein of unknown function (DUF790) (DUF790) | Protein of unknown function (DUF790) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006935 | Helicase/UvrB, N-terminal | Domain | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR040699 | DNA 3'-5' translocase XPB, damage recognition domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR008508 | Endonuclease Bax1 | Family |