6P3H

Crystal structure of LigU(K66M) bound to substrate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6p3ha1	Alpha and beta proteins (a+b)	Diaminopimelate epimerase-like	Diaminopimelate epimerase-like	automated matches	automated matches	(Novosphingobium sp. KA1 ) [TaxId: 164608 ],	SCOPe (2.08)
A	d6p3ha3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Novosphingobium sp. KA1 ) [TaxId: 164608 ],	SCOPe (2.08)
B [auth D]	d6p3hd1	Alpha and beta proteins (a+b)	Diaminopimelate epimerase-like	Diaminopimelate epimerase-like	automated matches	automated matches	(Novosphingobium sp. KA1 ) [TaxId: 164608 ],	SCOPe (2.08)
B [auth D]	d6p3hd3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Novosphingobium sp. KA1 ) [TaxId: 164608 ],	SCOPe (2.08)
C	d6p3hc1	Alpha and beta proteins (a+b)	Diaminopimelate epimerase-like	Diaminopimelate epimerase-like	automated matches	automated matches	(Novosphingobium sp. KA1 ) [TaxId: 164608 ],	SCOPe (2.08)
C	d6p3hc3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Novosphingobium sp. KA1 ) [TaxId: 164608 ],	SCOPe (2.08)
D [auth B]	d6p3hb1	Alpha and beta proteins (a+b)	Diaminopimelate epimerase-like	Diaminopimelate epimerase-like	automated matches	automated matches	(Novosphingobium sp. KA1 ) [TaxId: 164608 ],	SCOPe (2.08)
D [auth B]	d6p3hb3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Novosphingobium sp. KA1 ) [TaxId: 164608 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF04303	e6p3hA2	A: a+b complex topology	X: Diaminopimelate epimerase-like (From Topology)	H: Diaminopimelate epimerase-like (From Topology)	T: Diaminopimelate epimerase-like	F: PF04303	ECOD (1.6)
B [auth D]	PF04303	e6p3hD1	A: a+b complex topology	X: Diaminopimelate epimerase-like (From Topology)	H: Diaminopimelate epimerase-like (From Topology)	T: Diaminopimelate epimerase-like	F: PF04303	ECOD (1.6)
C	PF04303	e6p3hC1	A: a+b complex topology	X: Diaminopimelate epimerase-like (From Topology)	H: Diaminopimelate epimerase-like (From Topology)	T: Diaminopimelate epimerase-like	F: PF04303	ECOD (1.6)
D [auth B]	PF04303	e6p3hB1	A: a+b complex topology	X: Diaminopimelate epimerase-like (From Topology)	H: Diaminopimelate epimerase-like (From Topology)	T: Diaminopimelate epimerase-like	F: PF04303	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.310.10	Alpha Beta	Roll	Diaminopimelate Epimerase	Chain A, domain 1	CATH (utative)
B [auth D]	3.10.310.10	Alpha Beta	Roll	Diaminopimelate Epimerase	Chain A, domain 1	CATH (utative)
C	3.10.310.10	Alpha Beta	Roll	Diaminopimelate Epimerase	Chain A, domain 1	CATH (utative)
D [auth B]	3.10.310.10	Alpha Beta	Roll	Diaminopimelate Epimerase	Chain A, domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth D], C, D [auth B]	PF04303	PrpF protein (PrpF)	PrpF protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth D], C, D [auth B]	(4E)-oxalomesaconate Delta-isomerase	isomerase activity catalytic activity	phenylpropanoid catabolic process phenylpropanoid metabolic process catabolic process organic cyclic compound catabolic process secondary metabolic process lignin metabolic process organic cyclic compound metabolic process organic substance metabolic process lignin catabolic process metabolic process organic substance catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth D], C, D [auth B]	IPR007400	PrpF-like	Family
A, B [auth D], C, D [auth B]	IPR047687	4-oxalomesaconate tautomerase-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.