6HCM

Structure of the rabbit collided di-ribosome (stalled monosome)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth C1]SCOP2B SuperfamilyRibosomal S3Ae-like8053216 3002166 SCOP2B (2022-06-29)
L [auth L1]SCOP2B SuperfamilyWinged helix DNA-binding domain8055720 3000034 SCOP2B (2022-06-29)
M [auth M1]SCOP2B SuperfamilyNucleic acid-binding proteins8052707 3000135 SCOP2B (2022-06-29)
M [auth M1]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052708 3002138 SCOP2B (2022-06-29)
V [auth V1]SCOP2B SuperfamilyRibosomal protein S108097814 3001336 SCOP2B (2022-06-29)
DA [auth d1]SCOP2B SuperfamilyNucleic acid-binding proteins8095265 3000135 SCOP2B (2022-06-29)
FA [auth f1]SCOP2B SuperfamilyRibosomal protein S30e-like8053455 3002190 SCOP2B (2022-06-29)
HA [auth h1]SCOP2B SuperfamilyWD40 repeat-like8097816 3001694 SCOP2B (2022-06-29)
JA [auth k1]SCOP2B SuperfamilyABC transporter-like P-loop ATPases8089861 3002020 SCOP2B (2022-06-29)
JA [auth k1]SCOP2B SuperfamilyABC transporter-like P-loop ATPases8089860 3002020 SCOP2B (2022-06-29)
JA [auth k1]SCOP2B Superfamily4Fe-4S ferredoxins8089857 3000020 SCOP2B (2022-06-29)
OA [auth B3]SCOP2B SuperfamilyTranslational proteins8078357 3000811 SCOP2B (2022-06-29)
VA [auth N3]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082477 3000210 SCOP2B (2022-06-29)
XA [auth P3]SCOP2B SuperfamilyRibosomal protein L228097828 3001078 SCOP2B (2022-06-29)
DB [auth V3]SCOP2B Superfamily50S Ribosomal protein L14-like8072048 3000433 SCOP2B (2022-06-29)
FB [auth X3]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095966 3000210 SCOP2B (2022-06-29)
GB [auth Y3]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076754 3000334 SCOP2B (2022-06-29)
NB [auth f3]SCOP2B SuperfamilyTranslational proteins8093714 3000811 SCOP2B (2022-06-29)
TB [auth l3]SCOP2B SuperfamilyRibosomal protein L39e8095597 3001756 SCOP2B (2022-06-29)
XB [auth p3]SCOP2B SuperfamilyZn-binding ribosomal proteins8101435 3001320 SCOP2B (2022-06-29)
DC [auth J3]SCOP2B SuperfamilyRL5-like8073894 3001709 SCOP2B (2022-06-29)
FC [auth D3]SCOP2B SuperfamilyTranslational machinery components8052886 3000571 SCOP2B (2022-06-29)
N [auth N1]SCOP2B SuperfamilyL30e-like8063980 3001739 SCOP2B (2022-06-29)
O [auth O1]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052971 3001284 SCOP2B (2022-06-29)
O [auth O1]SCOP2B SuperfamilyHomeodomain-like8052970 3000001 SCOP2B (2022-06-29)
R [auth R1]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082683 3000100 SCOP2B (2022-06-29)
T [auth T1]SCOP2B SuperfamilyS13-like H2TH domain8101439 3000053 SCOP2B (2022-06-29)
X [auth X1]SCOP2B SuperfamilyRibosomal protein S88079081 3000709 SCOP2B (2022-06-29)
AA [auth a1]SCOP2B SuperfamilyWinged helix DNA-binding domain8090991 3000034 SCOP2B (2022-06-29)
EA [auth e1]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052584 3000068 SCOP2B (2022-06-29)
KB [auth c3]SCOP2B SuperfamilyL30e-like8094953 3001739 SCOP2B (2022-06-29)
MB [auth e3]SCOP2B SuperfamilyRibosomal protein L32e8102088 3000982 SCOP2B (2022-06-29)
QB [auth i3]SCOP2B SuperfamilyRibosomal protein L36e8053119 3002161 SCOP2B (2022-06-29)
G [auth G1]SCOP2B SuperfamilyRibosomal protein S78066001 3000799 SCOP2B (2022-06-29)
GC [auth I3]SCOP2B SuperfamilyRibosomal protein L16p/L10e8097320 3000884 SCOP2B (2022-06-29)
IC [auth u3]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8065344 3001911 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth B1]PF00318e6hcmB11 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
C [auth C1]PF01015e6hcmC11 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
C [auth C1]PF01015e6hcmC12 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
J [auth J1]PF01201e6hcmJ11 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
K [auth K1]PF00163,PF01479e6hcmK11 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
L [auth L1]PF03501e6hcmL11 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
M [auth M1]PF00366,PF16205e6hcmM11 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
Q [auth Q1]PF00203e6hcmQ11 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
V [auth V1]PF00338e6hcmV11 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
W [auth W1]PF01249e6hcmW11 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
Y [auth Y1]PF00164e6hcmY11 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
Z [auth Z1]PF01282e6hcmZ11 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
BA [auth b1]PF01283e6hcmb11 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
CA [auth c1]PF01667e6hcmc11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
DA [auth d1]PF01200e6hcmd11 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
FA [auth f1]PF04758e6hcmf11 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
GA [auth g1]PF01599e6hcmg11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
HA [auth h1]PF00400e6hcmh11 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
JA [auth k1]PF04068,PF12837e6hcmk13 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF04068,PF12837ECOD (1.6)
JA [auth k1]PF00005e6hcmk12 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00005ECOD (1.6)
OA [auth B3]PF00297e6hcmB31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
QA [auth E3]PF01159,PF03868e6hcmE31 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
TA [auth L3]PF01294e6hcmL31 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
UA [auth M3]PF00467,PF01929e6hcmM31 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
VA [auth N3]PF00827e6hcmN31 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
WA [auth O3]PF00572e6hcmO31 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
XA [auth P3]PF00237e6hcmP31 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
YA [auth Q3]PF17135e6hcmQ31 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
AB [auth S3]F_UNCLASSIFIEDe6hcmS32 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
AB [auth S3]PF01775e6hcmS31 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
BB [auth T3]PF01157e6hcmT31 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
CB [auth U3]PF01776e6hcmU31 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
DB [auth V3]PF00238e6hcmV31 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
FB [auth X3]PF00276,PF03939e6hcmX31 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
GB [auth Y3]PF16906e6hcmY31 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
IB [auth a3]PF00828e6hcma31 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
LB [auth d3]PF01198e6hcmd31 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
NB [auth f3]PF01247e6hcmf31 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
OB [auth g3]PF01199e6hcmg31 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
PB [auth h3]PF00831e6hcmh31 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
RB [auth j3]PF01907e6hcmj31 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
SB [auth k3]PF01781e6hcmk31 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
TB [auth l3]PF00832e6hcml31 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
WB [auth o3]PF00935e6hcmo31 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
XB [auth p3]PF01780e6hcmp31 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
ZB [auth s3]PF00466e6hcms31 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
ZB [auth s3]PF17777e6hcms32 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
AC [auth t3]PF00298e6hcmt32 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
AC [auth t3]PF03946e6hcmt31 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
DC [auth J3]PF00281,PF00673e6hcmJ31 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
FC [auth D3]PF14204,PF17144e6hcmD31 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
N [auth N1]PF01248e6hcmN11 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
O [auth O1]PF08069e6hcmO11 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
O [auth O1]PF00312e6hcmO12 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
P [auth P1]PF00411e6hcmP11 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
R [auth R1]PF00380e6hcmR11 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
S [auth S1]PF00833e6hcmS11 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
T [auth T1]PF00416e6hcmT11 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
U [auth U1]PF01090e6hcmU11 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
X [auth X1]PF00410e6hcmX12 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
X [auth X1]PF00410e6hcmX11 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
AA [auth a1]PF03297e6hcma11 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
EA [auth e1]PF00253e6hcme11 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
IA [auth j1]PF03465e6hcmj11 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF03465ECOD (1.6)
IA [auth j1]PF03463e6hcmj12 A: a+b three layersX: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (From Topology)H: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 (From Topology)T: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1F: PF03463ECOD (1.6)
IA [auth j1]PF03464e6hcmj13 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF03464ECOD (1.6)
D [auth D1]PF03719e6hcmD13 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
D [auth D1]PF00333e6hcmD11 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
D [auth D1]PF00333e6hcmD12 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
NA [auth A3]PF00181e6hcmA32 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
NA [auth A3]PF03947e6hcmA31 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
PA [auth C3]PF00573e6hcmC31 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
PA [auth C3]PF14374e6hcmC32 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
RA [auth F3]PF00327,PF08079e6hcmF31 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
SA [auth H3]PF00347e6hcmH31 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
E [auth E1]PF00189e6hcmE11 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
E [auth E1]PF07650e6hcmE12 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
ZA [auth R3]PF01280e6hcmR32 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
ZA [auth R3]PF01280e6hcmR31 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
EB [auth W3]PF01246e6hcmW31 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
F [auth F1]PF00900e6hcmF11 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
F [auth F1]PF00467,PF16121e6hcmF13 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
F [auth F1]PF00900,PF01479,PF08071e6hcmF12 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
HB [auth Z3]PF00467,PF01777e6hcmZ31 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
JB [auth b3]PF01779e6hcmb31 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
KB [auth c3]PF01248e6hcmc31 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
MB [auth e3]PF01655e6hcme31 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
QB [auth i3]PF01158e6hcmi31 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
G [auth G1]PF00177e6hcmG11 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
UB [auth m3]PF01020e6hcmm31 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
VB [auth n3]PF05162e6hcmn31 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
YB [auth r3]PF01778e6hcmr31 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
H [auth H1]PF01092e6hcmH11 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
EC [auth G3]PF01248e6hcmG31 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
GC [auth I3]PF00252e6hcmI31 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
IC [auth u3]PF00687e6hcmu31 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
IC [auth u3]PF00687e6hcmu32 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
I [auth I1]PF01251e6hcmI12 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth C1]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
K [auth K1]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
K [auth K1]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
L [auth L1]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
M [auth M1]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
M [auth M1]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
Q [auth Q1]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
V [auth V1]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
CA [auth c1]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
DA [auth d1]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
FA [auth f1]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
GA [auth g1]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
HA [auth h1]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
JA [auth k1]PF04068Possible Fer4-like domain in RNase L inhibitor, RLI (RLI)Possible Fer4-like domain in RNase L inhibitor, RLI- Family
JA [auth k1]PF000374Fe-4S binding domain (Fer4)4Fe-4S binding domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.Domain
JA [auth k1]PF00005ABC transporter (ABC_tran)ABC transporterABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.
Domain
OA [auth B3]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
QA [auth E3]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
QA [auth E3]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
UA [auth M3]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
VA [auth N3]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
XA [auth P3]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
BB [auth T3]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
DB [auth V3]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
FB [auth X3]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
FB [auth X3]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
GB [auth Y3]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
GB [auth Y3]PF00467KOW motif (KOW)KOW motif- Family
LB [auth d3]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
NB [auth f3]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
PB [auth h3]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
RB [auth j3]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
TB [auth l3]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
XB [auth p3]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
AC [auth t3]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
AC [auth t3]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
DC [auth J3]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
DC [auth J3]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
FC [auth D3]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
FC [auth D3]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
N [auth N1]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
O [auth O1]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
O [auth O1]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
R [auth R1]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
S [auth S1]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
T [auth T1]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
X [auth X1]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
AA [auth a1]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
EA [auth e1]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
NA [auth A3]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
NA [auth A3]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
RA [auth F3]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
RA [auth F3]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
SA [auth H3]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
E [auth E1]PF07650KH domain (KH_2)KH domain- Domain
E [auth E1]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
KB [auth c3]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
MB [auth e3]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
QB [auth i3]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
G [auth G1]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
YB [auth r3]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
H [auth H1]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
GC [auth I3]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
IC [auth u3]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
I [auth I1]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth A1]18S ribosomal RNA---
B [auth B1]uS2---
C [auth C1]40S ribosomal protein S3a
J [auth J1]eS8---
K [auth K1]Ribosomal protein S9 (Predicted)
L [auth L1]eS10 -
M [auth M1]Ribosomal protein S11
Q [auth Q1]uS19
V [auth V1]uS10
W [auth W1]eS21---
Y [auth Y1]uS12---
Z [auth Z1]eS24---
BA [auth b1]eS26---
CA [auth c1]40S ribosomal protein S27
DA [auth d1]Ribosomal protein S28
FA [auth f1]40S ribosomal protein S30
GA [auth g1]Ribosomal protein S27a
HA [auth h1]RACK1
JA [auth k1]ATP binding cassette subfamily E member 1 -
KA [auth 52]28S ribosomal RNA---
LA [auth 72]5S ribosomal RNA---
MA [auth 82]5.8S ribosomal RNA---
OA [auth B3]uL3
QA [auth E3]60S ribosomal protein L6
TA [auth L3]eL13---
UA [auth M3]Ribosomal protein L14
VA [auth N3]Ribosomal protein L15
WA [auth O3]uL13---
XA [auth P3]uL22
YA [auth Q3]eL18---
AB [auth S3]eL20---
BB [auth T3]eL21
CB [auth U3]eL22---
DB [auth V3]Ribosomal protein L23
FB [auth X3]uL23
GB [auth Y3]Ribosomal protein L26
IB [auth a3]uL15---
LB [auth d3]eL31
NB [auth f3]eL33
OB [auth g3]eL34---
PB [auth h3]uL29
RB [auth j3]Ribosomal protein L37
SB [auth k3]eL38---
TB [auth l3]eL39
WB [auth o3]eL42---
XB [auth p3]eL43
ZB [auth s3]uL10---
AC [auth t3]Ribosomal protein L12
CC [auth w3]mRNA---
DC [auth J3]Ribosomal protein L11
FC [auth D3]60S ribosomal protein L5
N [auth N1]40S ribosomal protein S12
O [auth O1]uS15
P [auth P1]uS11---
R [auth R1]Ribosomal protein S16
S [auth S1]eS17
T [auth T1]uS13
U [auth U1]eS19---
X [auth X1]Ribosomal protein S15a
AA [auth a1]eS25
EA [auth e1]uS14
IA [auth j1]eRF1(AAQ)---
D [auth D1]uS5---
NA [auth A3]Ribosomal protein L8
PA [auth C3]uL4---
RA [auth F3]uL30
SA [auth H3]uL6
E [auth E1]uS3
ZA [auth R3]eL19---
EB [auth W3]eL24
F [auth F1]eS4---
HB [auth Z3]eL27---
JB [auth b3]eL29---
KB [auth c3]eL30
MB [auth e3]eL32
QB [auth i3]60S ribosomal protein L36
G [auth G1]Ribosomal protein S5
UB [auth m3]eL40---
VB [auth n3]eL41---
YB [auth r3]eL28
H [auth H1]40S ribosomal protein S6
BC [auth 23]P-site tRNA---
EC [auth G3]eL8---
GC [auth I3]60S ribosomal protein L10
HC [auth 1]nascent chain---
IC [auth u3]Ribosomal protein
I [auth I1]40S ribosomal protein S7

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth C1]IPR001593Small ribosomal subunit protein eS1Family
C [auth C1]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
C [auth C1]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
K [auth K1]IPR002942RNA-binding S4 domainDomain
K [auth K1]IPR022801Small ribosomal subunit protein uS4Family
K [auth K1]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
K [auth K1]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
K [auth K1]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
K [auth K1]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
L [auth L1]IPR037447Small ribosomal subunit protein eS10Family
L [auth L1]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
L [auth L1]IPR005326Plectin/eS10, N-terminalDomain
M [auth M1]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
M [auth M1]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth M1]IPR000266Small ribosomal subunit protein uS17Family
M [auth M1]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
M [auth M1]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
Q [auth Q1]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
Q [auth Q1]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Q [auth Q1]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
Q [auth Q1]IPR002222Small ribosomal subunit protein uS19Family
V [auth V1]IPR001848Small ribosomal subunit protein uS10Family
V [auth V1]IPR027486Small ribosomal subunit protein uS10 domainDomain
V [auth V1]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
V [auth V1]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
V [auth V1]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
CA [auth c1]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
CA [auth c1]IPR000592Small ribosomal subunit protein eS27Family
CA [auth c1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth d1]IPR028626Ribosomal protein eS28 conserved siteConserved Site
DA [auth d1]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
DA [auth d1]IPR000289Small ribosomal subunit protein eS28Family
FA [auth f1]IPR039415Ubiquitin-like protein FUBIDomain
FA [auth f1]IPR019956Ubiquitin domainDomain
FA [auth f1]IPR019954Ubiquitin conserved siteConserved Site
FA [auth f1]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
FA [auth f1]IPR000626Ubiquitin-like domainDomain
FA [auth f1]IPR006846Small ribosomal subunit protein eS30Family
GA [auth g1]IPR019954Ubiquitin conserved siteConserved Site
GA [auth g1]IPR000626Ubiquitin-like domainDomain
GA [auth g1]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
GA [auth g1]IPR002906Small ribosomal subunit protein eS31Domain
GA [auth g1]IPR019956Ubiquitin domainDomain
GA [auth g1]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
GA [auth g1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth h1]IPR019775WD40 repeat, conserved siteConserved Site
HA [auth h1]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
HA [auth h1]IPR045223Small ribosomal subunit protein RACK1-likeFamily
HA [auth h1]IPR001680WD40 repeatRepeat
HA [auth h1]IPR020472G-protein beta WD-40 repeatRepeat
HA [auth h1]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
JA [auth k1]IPR007209RNase L inhibitor RLI-like, possible metal-binding domainDomain
JA [auth k1]IPR017871ABC transporter-like, conserved siteConserved Site
JA [auth k1]IPR003439ABC transporter-like, ATP-binding domainDomain
JA [auth k1]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
JA [auth k1]IPR003593AAA+ ATPase domainDomain
JA [auth k1]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
JA [auth k1]IPR013283RLI1Family
JA [auth k1]IPR034348RLI, domain 1Domain
JA [auth k1]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
OA [auth B3]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
OA [auth B3]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
OA [auth B3]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
OA [auth B3]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
OA [auth B3]IPR000597Large ribosomal subunit protein uL3Family
QA [auth E3]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
QA [auth E3]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
QA [auth E3]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
QA [auth E3]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
QA [auth E3]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
QA [auth E3]IPR000915Large ribosomal subunit protein eL6Family
UA [auth M3]IPR039660Large ribosomal subunit protein eL14Family
UA [auth M3]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
UA [auth M3]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
UA [auth M3]IPR002784Large ribosomal subunit protein eL14 domainDomain
UA [auth M3]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
VA [auth N3]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
VA [auth N3]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
VA [auth N3]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
VA [auth N3]IPR000439Large ribosomal subunit protein eL15Family
XA [auth P3]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
XA [auth P3]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
XA [auth P3]IPR001063Large ribosomal subunit protein uL22Family
XA [auth P3]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
BB [auth T3]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
BB [auth T3]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
BB [auth T3]IPR001147Large ribosomal subunit protein eL21Family
BB [auth T3]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
DB [auth V3]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
DB [auth V3]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
DB [auth V3]IPR000218Large ribosomal subunit protein uL14Family
FB [auth X3]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
FB [auth X3]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
FB [auth X3]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
FB [auth X3]IPR019985Large ribosomal subunit protein uL23Family
FB [auth X3]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
FB [auth X3]IPR013025Large ribosomal subunit protein uL23-likeFamily
GB [auth Y3]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
GB [auth Y3]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GB [auth Y3]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
GB [auth Y3]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
GB [auth Y3]IPR005824KOWDomain
GB [auth Y3]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
LB [auth d3]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
LB [auth d3]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
LB [auth d3]IPR000054Large ribosomal subunit protein eL31Family
NB [auth f3]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
NB [auth f3]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
NB [auth f3]IPR001780Large ribosomal subunit protein eL33Family
NB [auth f3]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
PB [auth h3]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
PB [auth h3]IPR001854Large ribosomal subunit protein uL29Family
PB [auth h3]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
PB [auth h3]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
RB [auth j3]IPR001569Large ribosomal subunit protein eL37Family
RB [auth j3]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
RB [auth j3]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RB [auth j3]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
TB [auth l3]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
TB [auth l3]IPR000077Large ribosomal subunit protein eL39Family
TB [auth l3]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
XB [auth p3]IPR002674Large ribosomal subunit protein eL43Family
XB [auth p3]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
XB [auth p3]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
AC [auth t3]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
AC [auth t3]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
AC [auth t3]IPR000911Ribosomal protein uL11Family
AC [auth t3]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
AC [auth t3]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
AC [auth t3]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
DC [auth J3]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
DC [auth J3]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
DC [auth J3]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
DC [auth J3]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
DC [auth J3]IPR002132Large ribosomal subunit protein uL5Family
FC [auth D3]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
FC [auth D3]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
N [auth N1]IPR000530Small ribosomal subunit protein eS12Family
N [auth N1]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
N [auth N1]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
N [auth N1]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
O [auth O1]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
O [auth O1]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth O1]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
O [auth O1]IPR000589Small ribosomal subunit protein uS15Family
R [auth R1]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
R [auth R1]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
R [auth R1]IPR000754Small ribosomal subunit protein uS9Family
R [auth R1]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
S [auth S1]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
S [auth S1]IPR001210Small ribosomal subunit protein eS17Family
S [auth S1]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
T [auth T1]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
T [auth T1]IPR001892Small ribosomal subunit protein uS13Family
T [auth T1]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
T [auth T1]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
X [auth X1]IPR000630Small ribosomal subunit protein uS8Family
X [auth X1]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
X [auth X1]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
AA [auth a1]IPR004977Small ribosomal subunit protein eS25Family
AA [auth a1]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
EA [auth e1]IPR001209Small ribosomal subunit protein uS14Family
EA [auth e1]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
EA [auth e1]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
EA [auth e1]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
NA [auth A3]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
NA [auth A3]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
NA [auth A3]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NA [auth A3]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
NA [auth A3]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
NA [auth A3]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
NA [auth A3]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
NA [auth A3]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
NA [auth A3]IPR002171Large ribosomal subunit protein uL2Family
RA [auth F3]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
RA [auth F3]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
RA [auth F3]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
RA [auth F3]IPR039699Large ribosomal subunit protein uL30Family
RA [auth F3]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
RA [auth F3]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
SA [auth H3]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
SA [auth H3]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
SA [auth H3]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
SA [auth H3]IPR000702Large ribosomal subunit protein uL6-likeFamily
E [auth E1]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
E [auth E1]IPR004044K Homology domain, type 2Domain
E [auth E1]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
E [auth E1]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
E [auth E1]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
E [auth E1]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
E [auth E1]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
EB [auth W3]IPR011017TRASH domainDomain
EB [auth W3]IPR000988Large ribosomal subunit protein eL24-relatedFamily
EB [auth W3]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
EB [auth W3]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
KB [auth c3]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
KB [auth c3]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
KB [auth c3]IPR000231Large ribosomal subunit protein eL30Family
KB [auth c3]IPR039109Large ribosomal subunit protein eL30-likeFamily
KB [auth c3]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
MB [auth e3]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
MB [auth e3]IPR001515Large ribosomal subunit protein eL32Family
MB [auth e3]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
QB [auth i3]IPR000509Large ribosomal subunit protein eL36Family
QB [auth i3]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
G [auth G1]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth G1]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth G1]IPR000235Small ribosomal subunit protein uS7Family
G [auth G1]IPR023798Small ribosomal subunit protein uS7 domainDomain
G [auth G1]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
YB [auth r3]IPR029004Ribosomal eL28/Mak16Domain
YB [auth r3]IPR002672Large ribosomal subunit protein eL28Family
H [auth H1]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
H [auth H1]IPR001377Small ribosomal subunit protein eS6Family
H [auth H1]IPR014401Small ribosomal subunit protein eS6-likeFamily
GC [auth I3]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
GC [auth I3]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
GC [auth I3]IPR016180Large ribosomal subunit protein uL16 domainDomain
GC [auth I3]IPR047873Large ribosomal subunit protein uL16Family
GC [auth I3]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
IC [auth u3]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
IC [auth u3]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
IC [auth u3]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
IC [auth u3]IPR002143Large ribosomal subunit protein uL1Family
IC [auth u3]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
I [auth I1]IPR000554Small ribosomal subunit protein eS7Family
I [auth I1]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site