6F3A
Cryo-EM structure of a single dynein tail domain bound to dynactin and BICD2N
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
FA [auth k] | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8033463 | 3001810 | SCOP2B (2022-06-29) |
GA [auth l] | SCOP2B Superfamily | Roadblock/LC7 domain-like | 8033463 | 3001810 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Subunits of heterodimeric actin filament capping protein Capz | 8077311 | 3001499 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
I | PF00022 | e6f3aI1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
A | PF00022 | e6f3aA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
B | PF00022 | e6f3aB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
C | PF00022 | e6f3aC1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
D | PF00022 | e6f3aD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
E | PF00022 | e6f3aE2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
F | PF00022 | e6f3aF1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
G | PF00022 | e6f3aG2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
S [auth U] | F_UNCLASSIFIED | e6f3aU1 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: F_UNCLASSIFIED | ECOD (1.6) |
T [auth V] | PF21711 | e6f3aV1 | A: beta duplicates or obligate multimers | X: Single-stranded left-handed beta-helix | H: Trimeric LpxA-like enzymes (From Topology) | T: Trimeric LpxA-like enzymes | F: PF21711 | ECOD (1.6) |
BA [auth f] | F_UNCLASSIFIED | e6f3af1 | A: alpha superhelices | X: N-terminal fragment of dynein heavy chain (From Topology) | H: N-terminal fragment of dynein heavy chain (From Topology) | T: N-terminal fragment of dynein heavy chain | F: F_UNCLASSIFIED | ECOD (1.6) |
DA [auth h] | F_UNCLASSIFIED | e6f3ah1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: F_UNCLASSIFIED | ECOD (1.6) |
FA [auth k] | PF03259 | e6f3ak1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF03259 | ECOD (1.6) |
GA [auth l] | PF03259 | e6f3al1 | A: a+b three layers | X: Profilin-like | H: profilin-like (From Topology) | T: profilin-like | F: PF03259 | ECOD (1.6) |
H | PF00022 | e6f3aH1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
J | PF00022 | e6f3aJ2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00022 | ECOD (1.6) |
K | PF01267 | e6f3aK3 | A: alpha bundles | X: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz (From Topology) | H: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz (From Topology) | T: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | F: PF01267 | ECOD (1.6) |
K | PF01267 | e6f3aK1 | A: a+b two layers | X: a+b domain in Capz (From Topology) | H: a+b domain in Capz (From Topology) | T: a+b domain in Capz | F: PF01267 | ECOD (1.6) |
K | PF01267 | e6f3aK2 | A: few secondary structure elements | X: beta-barrel domain in Capz (From Topology) | H: beta-barrel domain in Capz (From Topology) | T: beta-barrel domain in Capz | F: PF01267 | ECOD (1.6) |
L | PF01115 | e6f3aL1 | A: alpha bundles | X: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz (From Topology) | H: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz (From Topology) | T: alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | F: PF01115 | ECOD (1.6) |
L | PF01115 | e6f3aL3 | A: a+b two layers | X: a+b domain in Capz (From Topology) | H: a+b domain in Capz (From Topology) | T: a+b domain in Capz | F: PF01115 | ECOD (1.6) |
L | PF01115 | e6f3aL2 | A: few secondary structure elements | X: beta-barrel domain in Capz (From Topology) | H: beta-barrel domain in Capz (From Topology) | T: beta-barrel domain in Capz | F: PF01115 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00022 | Actin (Actin) | Actin | - | Family | |
T [auth V] | PF21711 | Dynactin subunit 5 (DCTN5) | Dynactin subunit 5 | - | Repeat |
W [auth a] | PF04912 | Dynamitin (Dynamitin) | Dynamitin | - | Family |
X [auth b], Y [auth c], Z [auth d] | PF04912 | Dynamitin (Dynamitin) | Dynamitin | - | Family |
AA [auth e], BA [auth f] | PF08385 | Dynein heavy chain, N-terminal region 1 (DHC_N1) | Dynein heavy chain, N-terminal region 1 | - | Family |
CA [auth g], DA [auth h] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
EA [auth j] | PF05783 | Dynein light intermediate chain (DLIC) (DLIC) | Dynein light intermediate chain (DLIC) | - | Family |
FA [auth k], GA [auth l] | PF03259 | Roadblock/LC7 domain (Robl_LC7) | Roadblock/LC7 domain | This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ... | Domain |
PF00022 | Actin (Actin) | Actin | - | Family | |
PF00022 | Actin (Actin) | Actin | - | Family | |
PF01267 | F-actin capping protein alpha subunit (F-actin_cap_A) | F-actin capping protein alpha subunit | - | Family | |
PF01115 | F-actin capping protein, beta subunit (F_actin_cap_B) | F-actin capping protein, beta subunit | - | Family | |