5Y6Z
Crystal structure of the coxsackievirus A16 polymerase elongation complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | RNA-dependent RNA-polymerase | 8071540 | 4002808 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8071541 | 3001272 | SCOP2 (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8071541 | 3001272 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RdRP_1_C | e5y6zA1 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: RdRP_1_C | ECOD (1.6) |
A | RdRP_1_N | e5y6zA2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RdRP_1_N | ECOD (1.6) |
D [auth E] | RdRP_1_C | e5y6zE1 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: RdRP_1_C | ECOD (1.6) |
D [auth E] | RdRP_1_N | e5y6zE2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: RdRP_1_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.270 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Reverse transcriptase/Diguanylate cyclase domain | CATH (4.3.0) |
A | 1.20.960.20 | Mainly Alpha | Up-down Bundle | Mitochondrial Import Receptor Subunit Tom20 | Chain A | CATH (4.3.0) |
D [auth E] | 3.30.70.270 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Reverse transcriptase/Diguanylate cyclase domain | CATH (4.3.0) |
D [auth E] | 1.20.960.20 | Mainly Alpha | Up-down Bundle | Mitochondrial Import Receptor Subunit Tom20 | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth E] | PF00680 | Viral RNA-dependent RNA polymerase (RdRP_1) | Viral RNA-dependent RNA polymerase | - | Family |