5XQ2
Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 5A6 on the guide strand
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ribonuclease H-like | 8053637 | 3000143 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RNA-binding domain RBD | 8053634 | 3000110 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | PAZ domain | 8053635 | 3001750 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Mid domain of argonaute | 8053636 | 3002210 | SCOP2B (2022-06-29) |
E [auth B] | SCOP2B Superfamily | Mid domain of argonaute | 8053636 | 3002210 | SCOP2B (2022-06-29) |
E [auth B] | SCOP2B Superfamily | RNA-binding domain RBD | 8053634 | 3000110 | SCOP2B (2022-06-29) |
E [auth B] | SCOP2B Superfamily | Ribonuclease H-like | 8053637 | 3000143 | SCOP2B (2022-06-29) |
E [auth B] | SCOP2B Superfamily | PAZ domain | 8053635 | 3001750 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF18309 | e5xq2A4 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF18309 | ECOD (1.6) |
A | F_UNCLASSIFIED | e5xq2A5 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF22472 | e5xq2A3 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: PF22472 | ECOD (1.6) |
A | PF22474 | e5xq2A6 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: PF22474 | ECOD (1.6) |
A | PF02171 | e5xq2A1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF02171 | ECOD (1.6) |
E [auth B] | PF18309 | e5xq2B4 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF18309 | ECOD (1.6) |
E [auth B] | F_UNCLASSIFIED | e5xq2B2 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth B] | PF22472 | e5xq2B3 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: PF22472 | ECOD (1.6) |
E [auth B] | PF22474 | e5xq2B6 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: PF22474 | ECOD (1.6) |
E [auth B] | PF02171 | e5xq2B5 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF02171 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, E [auth B] | PF02171 | Piwi domain (Piwi) | Piwi domain | - | Family |
A, E [auth B] | PF18309 | Argonaute PAZ domain (PAZ_3) | Argonaute PAZ domain | This is a PAZ domain is found in argonaute present in Thermus thermophiles. Argonaute has a central role in the RNA interference pathway by mediating the maturation of small interfering RNA (siRNA) through initial degradation of the passenger strand ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, E [auth B] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
A, E [auth B] | IPR040895 | Argonaute, PAZ domain | Domain |
A, E [auth B] | IPR003165 | Piwi domain | Domain |
A, E [auth B] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |