5XOU
Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 7T8 on the guide strand
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Mid domain of argonaute | 8053636 | 3002210 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribonuclease H-like | 8053637 | 3000143 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RNA-binding domain RBD | 8053634 | 3000110 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribonuclease H-like | 8053637 | 3000143 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RNA-binding domain RBD | 8053634 | 3000110 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Mid domain of argonaute | 8053636 | 3002210 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e5xouA2 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF22472 | e5xouA1 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: PF22472 | ECOD (1.6) |
A | PF22474 | e5xouA5 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: PF22474 | ECOD (1.6) |
A | PF02171 | e5xouA4 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF02171 | ECOD (1.6) |
B | F_UNCLASSIFIED | e5xouB3 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF22472 | e5xouB4 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: PF22472 | ECOD (1.6) |
B | PF22474 | e5xouB5 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: PF22474 | ECOD (1.6) |
B | PF02171 | e5xouB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF02171 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02171 | Piwi domain (Piwi) | Piwi domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR040895 | Argonaute, PAZ domain | Domain | |
IPR003165 | Piwi domain | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |