5VJ1

Crystal structure of a Pseudomonas malonate decarboxylase hetero-tetramer in complex with coenzyme A

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF16957e5vj1A2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: PF16957ECOD (1.6)
E [auth I]PF16957e5vj1I1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: PF16957ECOD (1.6)
B [auth C]PF06857e5vj1C1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF06857ECOD (1.6)
F [auth K]PF06857e5vj1K1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF06857ECOD (1.6)
C [auth D]PF01039e5vj1D1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: PF01039ECOD (1.6)
G [auth L]PF01039e5vj1L1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: PF01039ECOD (1.6)
D [auth E]PF06833e5vj1E1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: PF06833ECOD (1.6)
H [auth M]PF06833e5vj1M1 A: a/b three-layered sandwichesX: ClpP/crotonase (From Topology)H: ClpP/crotonase (From Topology)T: ClpP/crotonaseF: PF06833ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
E [auth I]		PF16957Malonate decarboxylase, alpha subunit, transporter (Mal_decarbox_Al)Malonate decarboxylase, alpha subunit, transporter- Family
B [auth C],
F [auth K]		PF06857Malonate decarboxylase delta subunit (MdcD) (ACP)Malonate decarboxylase delta subunit (MdcD)- Family
C [auth D],
G [auth L]		PF01039Carboxyl transferase domain (Carboxyl_trans)Carboxyl transferase domain- Family
D [auth E],
H [auth M]		PF06833Malonate decarboxylase gamma subunit (MdcE) (MdcE)Malonate decarboxylase gamma subunit (MdcE)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
E [auth I]		MdcA - -
B [auth C],
F [auth K]		MdcC -
C [auth D],
G [auth L]		MdcD -
D [auth E],
H [auth M]		MdcE- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
E [auth I]		IPR005777Acetyl-S-ACP:malonate ACP transferaseFamily
A,
E [auth I]		IPR037171NagB/RpiA transferase-likeHomologous Superfamily
B [auth C],
F [auth K]		IPR023439Malonate decarboxylase/citrate lyase acyl carrier proteinFamily
B [auth C],
F [auth K]		IPR009662Malonate decarboxylase delta subunitFamily
C [auth D],
G [auth L]		IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
C [auth D],
G [auth L]		IPR011762Acetyl-coenzyme A carboxyltransferase, N-terminalDomain
C [auth D],
G [auth L]		IPR017556Biotin-independent malonate decarboxylase, beta subunitFamily
C [auth D],
G [auth L]		IPR034733Acetyl-coenzyme A carboxylase carboxyl transferase subunit betaDomain
D [auth E],
H [auth M]		IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
D [auth E],
H [auth M]		IPR009648Biotin-dependent malonate decarboxylase, gamma subunitFamily