Annotations: 5UKB

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth D]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101355	3001763	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101355	3001763	SCOP2B (2022-06-29)
F [auth B]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101355	3001763	SCOP2B (2022-06-29)
H [auth A]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101355	3001763	SCOP2B (2022-06-29)
J [auth E]	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8101355	3001763	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth d]	V-set_12	e5ukbd1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
C [auth c]	V-set_12	e5ukbc1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
E [auth b]	V-set_12	e5ukbb1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
G [auth a]	V-set_12	e5ukba1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
I [auth e]	V-set_12	e5ukbe1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
B [auth D]	Rhabdo_ncap	e5ukbD1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: Rhabdo_ncap	ECOD (1.6)
D [auth C]	Rhabdo_ncap	e5ukbC1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: Rhabdo_ncap	ECOD (1.6)
F [auth B]	Rhabdo_ncap	e5ukbB1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: Rhabdo_ncap	ECOD (1.6)
H [auth A]	Rhabdo_ncap	e5ukbA1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: Rhabdo_ncap	ECOD (1.6)
J [auth E]	Rhabdo_ncap	e5ukbE1	A: alpha complex topology	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein (From Topology)	T: Rhabdovirus nucleocapsid protein	F: Rhabdo_ncap	ECOD (1.6)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	Anti-vesicular stomatitis virus N VHH	null	Vicugna pacos (alpaca)	-	-	RPI	Protein	IMGT (202415-0)
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	Nucleocapsid	null	Indiana vesiculovirus	-	-	RPI	Protein	IMGT (202415-0)
K [auth R]	Nucleocapsid	DNA	Indiana vesiculovirus	-	-	RPI	Protein	IMGT (202415-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	Heavy Chain	IGHV1	-	nucleocapsid	SAbDab (2024-04-19)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	PF00945	Rhabdovirus nucleocapsid protein (Rhabdo_ncap)	Rhabdovirus nucleocapsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	Anti-vesicular stomatitis virus N VHH	-	response to stimulus immune response immune system process adaptive immune response	protein-containing complex immunoglobulin complex
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	Nucleocapsid	RNA binding binding organic cyclic compound binding nucleic acid binding	-	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component intracellular anatomical structure cytoplasm cellular anatomical entity host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region helical viral capsid
K [auth R]	RNA (45-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	IPR003599	Immunoglobulin subtype	Domain
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	IPR013106	Immunoglobulin V-set domain	Domain
A [auth d], C [auth c], E [auth b], G [auth a], I [auth e]	IPR007110	Immunoglobulin-like domain	Domain
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	IPR035961	Rhabdovirus nucleoprotein-like	Homologous Superfamily
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	IPR000448	Rhabdovirus nucleocapsid	Domain
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	IPR023330	Rhabdovirus nucleocapsid, N-terminal	Homologous Superfamily
B [auth D], D [auth C], F [auth B], H [auth A], J [auth E]	IPR023331	Rhabdovirus nucleocapsid, C-terminal	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.