5OLQ
Rhamnogalacturonan lyase
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2 Family | Pectate transeliminase | 8076370 | 4000952 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Pectin lyase-like | 8076371 | 3001746 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | Pectin lyase-like | 8076371 | 3001746 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Pectin lyase-like | 8076371 | 3001746 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | PF16380,PF22842 | e5olqC1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: PF16380,PF22842 | ECOD (1.6) |
A | PF16380,PF22842 | e5olqA1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: PF16380,PF22842 | ECOD (1.6) |
B | PF16380,PF22842 | e5olqB1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Pectin lyase-like (From Topology) | T: Pectin lyase-like | F: PF16380,PF22842 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16380 | Rhamnogalacturonan lyase BT_4170-like, C-terminal (BT_4170-like_C) | Rhamnogalacturonan lyase BT_4170-like, C-terminal | This domain, previously known as DUF4990, is found at the C terminus of a group of proteins mainly from Bacteroides species, including the rhamnogalacturonan lyase BT_4170 from Bacteroides thetaiotaomicron [1,2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Rhamnogalacturonan lyase |
| - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012334 | Pectin lyase fold | Homologous Superfamily | |
IPR032153 | BT_4170-like, C-terminal | Domain | |
IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily |