Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth C]SCOP2B SuperfamilyRibosomal protein L48094174 3001146 SCOP2B (2022-06-29)
H [auth G]SCOP2 FamilyRibosomal protein L138066058 4003623 SCOP2 (2022-06-29)
H [auth G]SCOP2 SuperfamilyRibosomal protein L138066059 3001134 SCOP2 (2022-06-29)
O [auth N]SCOP2B SuperfamilyRibosomal protein L208094941 3000563 SCOP2B (2022-06-29)
P [auth O]SCOP2B Superfamilyl21p-like8094148 3002005 SCOP2B (2022-06-29)
Q [auth P]SCOP2B SuperfamilyRibosomal protein L228076726 3001078 SCOP2B (2022-06-29)
Z [auth 3]SCOP2 FamilyRibosomal protein L35p8083333 4003406 SCOP2 (2022-06-29)
Z [auth 3]SCOP2 SuperfamilyL35p-like8083334 3000790 SCOP2 (2022-06-29)
J [auth I]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070555 3001045 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyRibosomal protein L16p/L10e8076041 3000884 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyProkaryotic ribosomal protein L178089022 3000995 SCOP2B (2022-06-29)
N [auth M]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082423 3000334 SCOP2B (2022-06-29)
R [auth Q]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8086046 3000210 SCOP2B (2022-06-29)
S [auth R]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082503 3000334 SCOP2B (2022-06-29)
T [auth S]SCOP2 FamilyRibosomal protein L25-like8082274 4002376 SCOP2 (2022-06-29)
T [auth S]SCOP2 SuperfamilyRibosomal protein L25-like8082275 3001161 SCOP2 (2022-06-29)
U [auth T]SCOP2B SuperfamilyRibosomal L27 protein-like8075030 3000539 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyRibosomal protein L29 (L29p)8094170 3000713 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyRibosomal protein L30p/L7e8076281 3001378 SCOP2B (2022-06-29)
X [auth Z]SCOP2B SuperfamilyZn-binding ribosomal proteins8081583 3001320 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyTranslational proteins8089152 3000811 SCOP2B (2022-06-29)
I [auth H]SCOP2B Superfamily50S Ribosomal protein L14-like8093892 3000433 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
E [auth C]PF00573e5nrgC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
F [auth D]PF00281,PF00673e5nrgD1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
H [auth G]PF00572e5nrgG1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
M [auth L]PF00861e5nrgL1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
O [auth N]PF00453e5nrgN1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
P [auth O]PF00829e5nrgO1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
Q [auth P]PF00237e5nrgP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
Y [auth 2]PF00468e5nrg21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
Z [auth 3]PF01632e5nrg31 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
J [auth I]PF00828e5nrgI1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
K [auth J]PF00252e5nrgJ1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
L [auth K]PF01196e5nrgK1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
N [auth M]PF01245e5nrgM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
R [auth Q]PF00276e5nrgQ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
S [auth R]PF00467,PF17136e5nrgR1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
T [auth S]PF01386e5nrgS1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
T [auth S]PF14693e5nrgS2 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology)T: Ribosomal protein TL5/L25 C-terminal domain-relatedF: PF14693ECOD (1.6)
U [auth T]PF01016e5nrgT1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
VPF00831e5nrgV1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
WPF00327e5nrgW1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
X [auth Z]PF01783e5nrgZ1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
C [auth A]PF00181e5nrgA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
C [auth A]PF03947e5nrgA2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
D [auth B]PF00297e5nrgB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
G [auth E]PF00347e5nrgE2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
I [auth H]PF00238e5nrgH1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
F [auth D]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
F [auth D]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
H [auth G]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
M [auth L]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
O [auth N]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
P [auth O]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
Q [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
Y [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
Z [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
J [auth I]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
K [auth J]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
L [auth K]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
N [auth M]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
R [auth Q]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
S [auth R]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
S [auth R]PF00467KOW motif (KOW)KOW motif- Family
T [auth S]PF14693Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C)Ribosomal protein TL5, C-terminal domainThis family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ...This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown.
Domain
T [auth S]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
U [auth T]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
X [auth Z]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
C [auth A]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
C [auth A]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
D [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
G [auth E]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
I [auth H]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth X]23S ribosomal RNA---
E [auth C]50S ribosomal protein L4
F [auth D]50S ribosomal protein L5
H [auth G]50S ribosomal protein L13
M [auth L]50S ribosomal protein L18
O [auth N]50S ribosomal protein L20
P [auth O]50S ribosomal protein L21
Q [auth P]50S ribosomal protein L22
Y [auth 2]50S ribosomal protein L34
Z [auth 3]50S ribosomal protein L35
J [auth I]50S ribosomal protein L15
K [auth J]50S ribosomal protein L16
L [auth K]50S ribosomal protein L17
N [auth M]50S ribosomal protein L19
R [auth Q]50S ribosomal protein L23
S [auth R]50S ribosomal protein L24
B [auth Y]5S ribosomal RNA---
T [auth S]50S ribosomal protein L25
U [auth T]50S ribosomal protein L27
50S ribosomal protein L29
50S ribosomal protein L30
X [auth Z]50S ribosomal protein L32
C [auth A]50S ribosomal protein L2
D [auth B]50S ribosomal protein L3
G [auth E]50S ribosomal protein L6
I [auth H]50S ribosomal protein L14

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth C]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth C]IPR002136Large ribosomal subunit protein uL4Family
E [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
F [auth D]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
F [auth D]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
F [auth D]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
F [auth D]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
F [auth D]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
F [auth D]IPR002132Large ribosomal subunit protein uL5Family
H [auth G]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
H [auth G]IPR005822Large ribosomal subunit protein uL13Family
H [auth G]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
H [auth G]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
M [auth L]IPR005484Large ribosomal subunit protein uL18Family
M [auth L]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
O [auth N]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
O [auth N]IPR005813Large ribosomal subunit protein bL20Family
P [auth O]IPR028909Large ribosomal subunit protein bL21-likeFamily
P [auth O]IPR001787Large ribosomal subunit protein bL21Family
P [auth O]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
Q [auth P]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
Q [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
Q [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
Q [auth P]IPR001063Large ribosomal subunit protein uL22Family
Q [auth P]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
Y [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
Y [auth 2]IPR000271Large ribosomal subunit protein bL34Family
Z [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
Z [auth 3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
Z [auth 3]IPR001706Large ribosomal subunit protein bL35Family
Z [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
J [auth I]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
J [auth I]IPR021131Large ribosomal subunit protein uL15/eL18Domain
J [auth I]IPR030878Large ribosomal subunit protein uL15Family
J [auth I]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
J [auth I]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
K [auth J]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
K [auth J]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
K [auth J]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
K [auth J]IPR016180Large ribosomal subunit protein uL16 domainDomain
K [auth J]IPR047873Large ribosomal subunit protein uL16Family
L [auth K]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
L [auth K]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
L [auth K]IPR000456Large ribosomal subunit protein bL17Family
N [auth M]IPR001857Large ribosomal subunit protein bL19Family
N [auth M]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
N [auth M]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
N [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth Q]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
R [auth Q]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
R [auth Q]IPR013025Large ribosomal subunit protein uL23-likeFamily
S [auth R]IPR003256Large ribosomal subunit protein uL24Family
S [auth R]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
S [auth R]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
S [auth R]IPR005824KOWDomain
S [auth R]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
S [auth R]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
T [auth S]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
T [auth S]IPR001021Ribosomal protein bL25, long-formFamily
T [auth S]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
T [auth S]IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
T [auth S]IPR020057Large ribosomal subunit protein bL25, beta domainDomain
T [auth S]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
U [auth T]IPR001684Large ribosomal subunit protein bL27Family
U [auth T]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
IPR001854Large ribosomal subunit protein uL29Family
IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
X [auth Z]IPR002677Large ribosomal subunit protein bL32Family
X [auth Z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
X [auth Z]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
C [auth A]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
C [auth A]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth A]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth A]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
C [auth A]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
C [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth A]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
C [auth A]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
C [auth A]IPR002171Large ribosomal subunit protein uL2Family
D [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
D [auth B]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
D [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth B]IPR000597Large ribosomal subunit protein uL3Family
G [auth E]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
G [auth E]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
G [auth E]IPR000702Large ribosomal subunit protein uL6-likeFamily
G [auth E]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
G [auth E]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
I [auth H]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
I [auth H]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
I [auth H]IPR000218Large ribosomal subunit protein uL14Family
I [auth H]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site