5N88
Crystal structure of antibody bound to viral protein
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth E] | d5n88e1 | All alpha proteins | N-cbl like | HIV integrase-binding domain | HIV integrase-binding domain | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D [auth E] | d5n88e2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A [auth H] | d5n88h_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth A] | d5n88a_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth D] | d5n88d_ | All alpha proteins | N-cbl like | HIV integrase-binding domain | HIV integrase-binding domain | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth E] | SCOP2B Superfamily | HIV integrase-binding domain | 8035439 | 3001321 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | HIV integrase-binding domain | 8035439 | 3001321 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth E] | PF11467 | e5n88E1 | A: alpha bundles | X: N-cbl like | H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology) | T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | F: PF11467 | ECOD (1.6) |
A [auth H] | PF07686 | e5n88H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth A] | PF07686 | e5n88A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B [auth D] | PF11467 | e5n88D1 | A: alpha bundles | X: N-cbl like | H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology) | T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | F: PF11467 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth H], C [auth A] | VH59 antibody | VH | Homo sapiens (human) | IGHV3-48*01, IGHV3-48*04, IGHJ4*01, IGHJ4*02, IGHJ4*03 | V-DOMAIN VH | IG | VH | IMGT (202422-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth H], C [auth A] | Heavy Chain | IGHV3 | - | pc4 and sfrs1-interacting protein | SAbDab (2024-06-07) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth E] | PF11467 | Lens epithelium-derived growth factor (LEDGF) (LEDGF) | Lens epithelium-derived growth factor (LEDGF) | LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alph ... | Domain |
B [auth D] | PF11467 | Lens epithelium-derived growth factor (LEDGF) (LEDGF) | Lens epithelium-derived growth factor (LEDGF) | LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alph ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
D [auth E] | IPR021567 | Lens epithelium-derived growth factor, integrase-binding domain | Domain |
D [auth E] | IPR036218 | HIV integrase-binding domain superfamily | Homologous Superfamily |
D [auth E] | IPR000313 | PWWP domain | Domain |
D [auth E] | IPR035441 | TFIIS/LEDGF domain superfamily | Homologous Superfamily |
B [auth D] | IPR021567 | Lens epithelium-derived growth factor, integrase-binding domain | Domain |
B [auth D] | IPR036218 | HIV integrase-binding domain superfamily | Homologous Superfamily |
B [auth D] | IPR000313 | PWWP domain | Domain |
B [auth D] | IPR035441 | TFIIS/LEDGF domain superfamily | Homologous Superfamily |