5GPE

Crystal structure of the transcription regulator PbrR691 from Ralstonia metallidurans CH34 in complex with Lead(II)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5gpea_	All alpha proteins	Putative DNA-binding domain	Putative DNA-binding domain	automated matches	automated matches	(Cupriavidus metallidurans CH34 ) [TaxId: 266264 ],	SCOPe (2.08)
B	d5gpeb_	All alpha proteins	Putative DNA-binding domain	Putative DNA-binding domain	automated matches	automated matches	(Cupriavidus metallidurans CH34 ) [TaxId: 266264 ],	SCOPe (2.08)
C	d5gpec_	All alpha proteins	Putative DNA-binding domain	Putative DNA-binding domain	automated matches	automated matches	(Cupriavidus metallidurans CH34 ) [TaxId: 266264 ],	SCOPe (2.08)
D	d5gped_	All alpha proteins	Putative DNA-binding domain	Putative DNA-binding domain	automated matches	automated matches	(Cupriavidus metallidurans CH34 ) [TaxId: 266264 ],	SCOPe (2.08)
E	d5gpee_	All alpha proteins	Putative DNA-binding domain	Putative DNA-binding domain	automated matches	automated matches	(Cupriavidus metallidurans CH34 ) [TaxId: 266264 ],	SCOPe (2.08)
F	d5gpef_	All alpha proteins	Putative DNA-binding domain	Putative DNA-binding domain	automated matches	automated matches	(Cupriavidus metallidurans CH34 ) [TaxId: 266264 ],	SCOPe (2.08)
G	d5gpeg_	All alpha proteins	Putative DNA-binding domain	Putative DNA-binding domain	automated matches	automated matches	(Cupriavidus metallidurans CH34 ) [TaxId: 266264 ],	SCOPe (2.08)
H	d5gpeh_	All alpha proteins	Putative DNA-binding domain	Putative DNA-binding domain	automated matches	automated matches	(Cupriavidus metallidurans CH34 ) [TaxId: 266264 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	DNA-binding N-terminal domain of transcription activators	8075300	4000766	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Dimerization domain of Mer-like transcriptional regulators	8086655	3002692	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Putative DNA-binding domain	8075301	3000158	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Putative DNA-binding domain	8075301	3000158	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Dimerization domain of Mer-like transcriptional regulators	8086655	3002692	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Putative DNA-binding domain	8075301	3000158	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dimerization domain of Mer-like transcriptional regulators	8086655	3002692	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Putative DNA-binding domain	8075301	3000158	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Dimerization domain of Mer-like transcriptional regulators	8086655	3002692	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Putative DNA-binding domain	8075301	3000158	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Dimerization domain of Mer-like transcriptional regulators	8086655	3002692	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Putative DNA-binding domain	8075301	3000158	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Dimerization domain of Mer-like transcriptional regulators	8086655	3002692	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Putative DNA-binding domain	8075301	3000158	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Dimerization domain of Mer-like transcriptional regulators	8086655	3002692	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Putative DNA-binding domain	8075301	3000158	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Dimerization domain of Mer-like transcriptional regulators	8086655	3002692	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MerR_1	e5gpeA1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
B	MerR_1	e5gpeB1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
C	MerR_1	e5gpeC1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
D	MerR_1	e5gpeD1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
E	MerR_1	e5gpeE1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
F	MerR_1	e5gpeF1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
G	MerR_1	e5gpeG1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)
H	MerR_1	e5gpeH1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: MerR_1	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF09278	MerR, DNA binding (MerR-DNA-bind)	MerR, DNA binding	Members of this family of DNA-binding domains are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged h ...	Members of this family of DNA-binding domains are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF00376	MerR family regulatory protein (MerR)	MerR family regulatory protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Transcriptional regulator, MerR-family	DNA binding binding organic cyclic compound binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity cation binding ion binding metal ion binding small molecule binding	regulation of cellular process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological process positive regulation of nucleobase-containing compound metabolic process cellular metabolic process primary metabolic process regulation of cellular process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological process positive regulation of nucleobase-containing compound metabolic process cellular metabolic process primary metabolic process regulation of cellular metabolic process positive regulation of RNA metabolic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process positive regulation of DNA-templated transcription cellular biosynthetic process positive regulation of biological process RNA metabolic process positive regulation of cellular metabolic process RNA biosynthetic process nucleic acid biosynthetic process organic substance metabolic process positive regulation of biosynthetic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process positive regulation of RNA biosynthetic process cellular process positive regulation of cellular biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011791	Cd(II)/Pb(II)-responsive transcriptional regulator	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009061	Putative DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR047057	MerR transcriptional regulator	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR015358	Transcription regulator MerR, DNA binding	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000551	MerR-type HTH domain	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.