5EFG
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with acetate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | d5efgd_ | Alpha and beta proteins (a/b) | Arginase/deacetylase | Arginase/deacetylase | automated matches | automated matches | Zebrafish (Danio rerio ) [TaxId: 7955 ], | SCOPe (2.08) |
B [auth A] | d5efga_ | Alpha and beta proteins (a/b) | Arginase/deacetylase | Arginase/deacetylase | automated matches | automated matches | Zebrafish (Danio rerio ) [TaxId: 7955 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth D] | SCOP2B Superfamily | Arginase/deacetylase-like | 8087567 | 3000260 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Arginase/deacetylase-like | 8087567 | 3000260 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | Hist_deacetyl | e5efgD1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Arginase/deacetylase | F: Hist_deacetyl | ECOD (1.6) |
B [auth A] | Hist_deacetyl | e5efgA1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Arginase/deacetylase | F: Hist_deacetyl | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth D] | 3.40.800.20 | Alpha Beta | 3-Layer(aba) Sandwich | Arginase | Chain A | CATH (4.3.0) |
B [auth A] | 3.40.800.20 | Alpha Beta | 3-Layer(aba) Sandwich | Arginase | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth D], B [auth A] | PF00850 | Histone deacetylase domain (Hist_deacetyl) | Histone deacetylase domain | Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins [1]. ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth D], B [auth A] | IPR000286 | Histone deacetylase family | Family |
A [auth D], B [auth A] | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
A [auth D], B [auth A] | IPR023801 | Histone deacetylase domain | Domain |
A [auth D], B [auth A] | IPR001607 | Zinc finger, UBP-type | Domain |
A [auth D], B [auth A] | IPR037138 | Histone deacetylase domain superfamily | Homologous Superfamily |
A [auth D], B [auth A] | IPR023696 | Ureohydrolase domain superfamily | Homologous Superfamily |
A [auth D], B [auth A] | IPR050284 | Histone deacetylase and polyamine deacetylase | Family |