5DD4
Apo structure of transcriptional factor AraR from Bacteroides thetaiotaomicron VPI
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5dd4a2 | All alpha proteins | DNA/RNA-binding 3-helical bundle | 'Winged helix' DNA-binding domain | Nudix-associated domain | Hypothetical protein BT0354, C-terminal domain | (Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ], | SCOPe (2.08) |
A | d5dd4a1 | Alpha and beta proteins (a+b) | Nudix | Nudix | BT0354 N-terminal domain-like | Hypothetical protein BT0354, N-terminal domain | (Bacteroides thetaiotaomicron VPI-5482 ) [TaxId: 226186 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.79.10 | Alpha Beta | Alpha-Beta Complex | Nucleoside Triphosphate Pyrophosphohydrolase | Nucleoside Triphosphate Pyrophosphohydrolase | CATH (4.3.0) |
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF19368 | AraR C-terminal winged HTH domain (AraR_C) | AraR C-terminal winged HTH domain | This entry represents the C-terminal DNA-binding domain of AraR proteins which are involved in regulating Arabinose utilisation [1]. This domain has a winged helix-turn-helix structure [1]. | Domain | |
PF00293 | NUDIX domain (NUDIX) | NUDIX domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
TRANSCRIPTIONAL REGULATOR AraR | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000086 | NUDIX hydrolase domain | Domain | |
IPR015797 | NUDIX hydrolase-like domain superfamily | Homologous Superfamily | |
IPR045830 | AraR-like, winged helix DNA-binding domain | Domain | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |