Annotations: 4KMD

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Suppressor of Fused N-terminal domain	8036300	3002012	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SUFU	e4kmdA1	A: a+b three layers	X: Suppressor of Fused, N-terminal domain (From Topology)	H: Suppressor of Fused, N-terminal domain (From Topology)	T: Suppressor of Fused, N-terminal domain	F: SUFU	ECOD (1.6)
A	SUFU_C	e4kmdA3	A: a+b three layers	X: Suppressor of Fused, C-terminal domain (From Topology)	H: Suppressor of Fused, C-terminal domain (From Topology)	T: Suppressor of Fused, C-terminal domain	F: SUFU_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1360.230	Alpha Beta	2-Layer Sandwich	Gyrase A	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF05076	Suppressor of fused protein (SUFU) (SUFU)	Suppressor of fused protein (SUFU)	-	Family
A	PF12470	Suppressor of Fused Gli/Ci N terminal binding domain (SUFU_C)	Suppressor of Fused Gli/Ci N terminal binding domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Sufu	transcription corepressor activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity protein binding binding kinase binding enzyme binding protein kinase binding beta-catenin binding	protein localization negative regulation of protein transport regulation of localization establishment of protein localization negative regulation of nucleocytoplasmic transport nitrogen compound transport regulation of cellular process nucleocytoplasmic transport nuclear transport negative regulation of biological process negative regulation of intracellular protein transport negative regulation of transport localization import into nucleus cellular macromolecule localization protein localization negative regulation of protein transport regulation of localization establishment of protein localization negative regulation of nucleocytoplasmic transport nitrogen compound transport regulation of cellular process nucleocytoplasmic transport nuclear transport negative regulation of biological process negative regulation of intracellular protein transport negative regulation of transport localization import into nucleus cellular macromolecule localization establishment of localization in cell regulation of intracellular transport regulation of biological process organic substance transport negative regulation of establishment of protein localization intracellular transport regulation of nucleocytoplasmic transport protein localization to nucleus establishment of localization establishment of protein localization to organelle regulation of intracellular protein transport intracellular protein transport cellular localization regulation of protein localization transport regulation of protein localization to nucleus negative regulation of protein import into nucleus regulation of protein import into nucleus protein import into nucleus negative regulation of cellular process negative regulation of protein localization negative regulation of intracellular transport regulation of transport biological regulation regulation of establishment of protein localization regulation of protein transport negative regulation of protein localization to nucleus protein transport regulation of cellular localization macromolecule localization protein localization to organelle cellular process cellular biosynthetic process negative regulation of DNA-binding transcription factor activity RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance metabolic process organic substance biosynthetic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process cellular metabolic process negative regulation of molecular function primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process regulation of molecular function organic cyclic compound metabolic process regulation of gene expression biosynthetic process regulation of DNA-binding transcription factor activity organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process developmental process heart development multicellular organismal process animal organ development ventricular septum development circulatory system development multicellular organism development cardiac septum development cardiac chamber development anatomical structure development cardiac ventricle development system development skin development regulation of osteoblast differentiation regulation of developmental process cellular developmental process negative regulation of osteoblast differentiation negative regulation of developmental process regulation of cell differentiation osteoblast differentiation ossification cell differentiation negative regulation of cell differentiation cellular response to stimulus smoothened signaling pathway involved in ventral spinal cord patterning response to stimulus signaling cell fate commitment involved in pattern specification pattern specification process cell differentiation in spinal cord cell communication neurogenesis central nervous system neuron differentiation spinal cord development smoothened signaling pathway involved in ventral spinal cord interneuron specification ventral spinal cord interneuron specification neuron differentiation ventral spinal cord interneuron differentiation signal transduction neuron fate specification cell surface receptor signaling pathway neuron fate commitment spinal cord dorsal/ventral patterning cell fate specification involved in pattern specification nervous system development cell fate specification smoothened signaling pathway regionalization ventral spinal cord interneuron fate commitment generation of neurons dorsal/ventral pattern formation central nervous system development spinal cord patterning ventral spinal cord development cell fate commitment catabolic process negative regulation of proteolysis negative regulation of proteolysis involved in protein catabolic process proteolysis involved in protein catabolic process regulation of ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of proteolysis involved in protein catabolic process regulation of proteolysis modification-dependent macromolecule catabolic process proteolysis protein metabolic process negative regulation of protein metabolic process negative regulation of ubiquitin-dependent protein catabolic process negative regulation of macromolecule metabolic process organonitrogen compound catabolic process negative regulation of catabolic process organonitrogen compound metabolic process regulation of protein metabolic process negative regulation of metabolic process regulation of catabolic process protein catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process organic substance catabolic process artery development aorta development vasculature development blood vessel development negative regulation of signaling regulation of signal transduction negative regulation of cell communication negative regulation of smoothened signaling pathway regulation of smoothened signaling pathway regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication regulation of cellular response to drug cellular response to xenobiotic stimulus regulation of response to drug positive regulation of biological process positive regulation of response to drug response to xenobiotic stimulus positive regulation of response to stimulus cellular response to chemical stimulus response to chemical positive regulation of cellular response to drug positive regulation of cellular process spinal cord motor neuron cell fate specification smoothened signaling pathway involved in spinal cord motor neuron cell fate specification spinal cord motor neuron differentiation embryonic epithelial tube formation chordate embryonic development tube formation embryo development epithelial tube formation tube morphogenesis primary neural tube formation embryo development ending in birth or egg hatching epithelial tube morphogenesis morphogenesis of embryonic epithelium epithelium development neural tube development tube development embryonic morphogenesis morphogenesis of an epithelium tissue development anatomical structure morphogenesis tissue morphogenesis neural tube closure neural tube formation anatomical structure formation involved in morphogenesis tube closure spermatid development spermatid differentiation sexual reproduction spermatogenesis reproductive process multicellular organismal reproductive process cell development cellular process involved in reproduction in multicellular organism developmental process involved in reproduction gamete generation male gamete generation germ cell development negative regulation of cellular metabolic process negative regulation of RNA biosynthetic process transcription by RNA polymerase II negative regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of cellular biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process negative regulation of biosynthetic process coronary vasculature development heart morphogenesis embryonic heart tube development embryonic heart tube morphogenesis heart looping determination of bilateral symmetry animal organ morphogenesis embryonic organ development determination of left/right symmetry specification of symmetry embryonic organ morphogenesis determination of heart left/right asymmetry left/right pattern formation	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle cell projection organelle ciliary tip cilium plasma membrane bounded cell projection nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle cell projection organelle ciliary tip cilium plasma membrane bounded cell projection nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen nuclear lumen protein-containing complex GLI-SUFU complex ciliary base
B	Zinc finger protein GLI1	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity cytoskeletal protein binding microtubule binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity cytoskeletal protein binding microtubule binding protein binding tubulin binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity cation binding ion binding metal ion binding small molecule binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding protein-containing complex binding chromatin binding	developmental process multicellular organismal process reproductive system development prostate gland development reproductive process gland development animal organ development urogenital system development developmental process involved in reproduction multicellular organism development anatomical structure development reproductive structure development system development regulation of hepatocyte proliferation developmental process multicellular organismal process reproductive system development prostate gland development reproductive process gland development animal organ development urogenital system development developmental process involved in reproduction multicellular organism development anatomical structure development reproductive structure development system development regulation of hepatocyte proliferation regulation of cellular process liver development gland morphogenesis animal organ morphogenesis epithelial cell proliferation liver morphogenesis regulation of biological process cell population proliferation biological regulation epithelial cell proliferation involved in liver morphogenesis anatomical structure morphogenesis hepatocyte proliferation regulation of cell population proliferation hepaticobiliary system development cellular process regulation of epithelial cell proliferation regulation of growth positive regulation of cell population proliferation regulation of cardiac muscle tissue growth regulation of developmental process developmental growth cardiac muscle cell proliferation positive regulation of biological process organ growth striated muscle tissue development positive regulation of developmental process positive regulation of cardiac muscle cell proliferation regulation of organ growth regulation of heart growth regulation of cardiac muscle cell proliferation muscle cell proliferation regulation of multicellular organismal process cardiac muscle tissue growth muscle tissue development positive regulation of developmental growth positive regulation of cellular process striated muscle cell proliferation positive regulation of heart growth heart development heart growth regulation of multicellular organismal development regulation of developmental growth cardiac muscle tissue development positive regulation of organ growth growth tissue development circulatory system development positive regulation of growth positive regulation of cardiac muscle tissue growth positive regulation of multicellular organismal process dorsal/ventral pattern formation pattern specification process regionalization cellular response to stimulus response to stimulus signaling negative regulation of signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of Wnt signaling pathway negative regulation of cellular process signal transduction Wnt signaling pathway regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway negative regulation of response to stimulus negative regulation of signal transduction negative regulation of canonical Wnt signaling pathway regulation of response to stimulus regulation of cell communication positive regulation of DNA replication regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process organic substance metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of nucleobase-containing compound metabolic process primary metabolic process DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process organic cyclic compound metabolic process DNA replication positive regulation of DNA metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process regulation of DNA replication cerebellum morphogenesis cerebellar cortex morphogenesis head development hindbrain morphogenesis brain development nervous system development cerebellar cortex development cerebellum development central nervous system development metencephalon development hindbrain development forebrain development endocrine system development pituitary gland development diencephalon development ventral midline development spermatid development spermatid differentiation sexual reproduction cellular developmental process spermatogenesis multicellular organismal reproductive process cell development cellular process involved in reproduction in multicellular organism gamete generation male gamete generation cell differentiation germ cell development cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process regulation of RNA biosynthetic process regulation of biosynthetic process cellular metabolic process regulation of cellular metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription response to stress response to wounding digestive system development tube development digestive tract development tube morphogenesis digestive tract morphogenesis epithelium development epidermal cell differentiation epidermis development epithelial cell differentiation notochord regression embryonic organ morphogenesis embryonic morphogenesis notochord morphogenesis embryo development anatomical structure regression embryonic organ development notochord development positive regulation of macromolecule biosynthetic process transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of cellular metabolic process positive regulation of biosynthetic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process regulation of osteoblast differentiation regulation of cell differentiation osteoblast differentiation ossification smoothened signaling pathway regulation of smoothened signaling pathway respiratory tube development lung development respiratory system development positive regulation of cell communication positive regulation of signal transduction positive regulation of response to stimulus positive regulation of smoothened signaling pathway positive regulation of signaling animal organ regeneration regeneration liver regeneration positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion regulation of cell cycle phase transition regulation of cell cycle process cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition positive regulation of cell cycle positive regulation of cell cycle G1/S phase transition positive regulation of cell cycle phase transition positive regulation of cell cycle process cell cycle regulation of cell cycle cell cycle process proximal/distal pattern formation	membrane-bounded organelle intracellular anatomical structure axoneme ciliary plasm cilium cellular anatomical entity cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection intracellular organelle cell projection cytoskeleton organelle intracellular non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure axoneme ciliary plasm cilium cellular anatomical entity cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection intracellular organelle cell projection cytoskeleton organelle intracellular non-membrane-bounded organelle cytoplasm non-membrane-bounded organelle cytosol ciliary tip protein-containing complex GLI-SUFU complex nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen ciliary base

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR037181	Suppressor of fused, N-terminal	Homologous Superfamily
A	IPR038489	Suppressor of fused, C-terminal domain superfamily	Homologous Superfamily
A	IPR020941	Suppressor of fused-like domain	Domain
A	IPR007768	Suppressor of fused	Family
A	IPR016591	Suppressor of fused, eukaryotic	Family
A	IPR024314	Suppressor of fused C-terminal	Domain
B	IPR013087	Zinc finger C2H2-type	Domain
B	IPR043359	C2H2-type zinc-finger protein GLI-like	Family
B	IPR036236	Zinc finger C2H2 superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9UMX1	nevoid basal cell carcinoma syndrome medulloblastoma familial meningioma skin basal cell carcinoma gastrointestinal stromal tumor Joubert syndrome 32 medullomyoblastoma with myogenic differentiation childhood medulloblastoma melanotic medulloblastoma adult medulloblastoma Meningiomas, Multiple ovarian cancer skin pigmented basal cell carcinoma acrocallosal syndrome allergic rhinitis nevoid basal cell carcinoma syndrome medulloblastoma familial meningioma skin basal cell carcinoma gastrointestinal stromal tumor Joubert syndrome 32 medullomyoblastoma with myogenic differentiation childhood medulloblastoma melanotic medulloblastoma adult medulloblastoma Meningiomas, Multiple ovarian cancer skin pigmented basal cell carcinoma acrocallosal syndrome allergic rhinitis cancer desmoplastic/nodular medulloblastoma prostate carcinoma autism spectrum disorder endogenous depression holoprosencephaly bipolar disorder hydrocephalus medulloblastoma with extensive nodularity
B	Pharos: P08151	acute promyelocytic leukemia diffuse large B-cell lymphoma peripheral nervous system disease urinary bladder cancer peripheral neuropathy cancer gastrointestinal stromal tumor glioblastoma Liver carcinoma medulloblastoma atypical teratoid rhabdoid tumor Ellis-van Creveld syndrome heart disease malignant mesothelioma nevoid basal cell carcinoma syndrome acute promyelocytic leukemia diffuse large B-cell lymphoma peripheral nervous system disease urinary bladder cancer peripheral neuropathy cancer gastrointestinal stromal tumor glioblastoma Liver carcinoma medulloblastoma atypical teratoid rhabdoid tumor Ellis-van Creveld syndrome heart disease malignant mesothelioma nevoid basal cell carcinoma syndrome urinary bladder neoplasm hepatocellular carcinoma osteosarcoma psoriasis

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.