4HL6

YfdE from Escherichia coli

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4hl6a_	Alpha and beta proteins (a/b)	CoA-transferase family III (CaiB/BaiF)	CoA-transferase family III (CaiB/BaiF)	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d4hl6b_	Alpha and beta proteins (a/b)	CoA-transferase family III (CaiB/BaiF)	CoA-transferase family III (CaiB/BaiF)	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
C	d4hl6c_	Alpha and beta proteins (a/b)	CoA-transferase family III (CaiB/BaiF)	CoA-transferase family III (CaiB/BaiF)	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
D	d4hl6d_	Alpha and beta proteins (a/b)	CoA-transferase family III (CaiB/BaiF)	CoA-transferase family III (CaiB/BaiF)	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
E	d4hl6e_	Alpha and beta proteins (a/b)	CoA-transferase family III (CaiB/BaiF)	CoA-transferase family III (CaiB/BaiF)	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
F	d4hl6f_	Alpha and beta proteins (a/b)	CoA-transferase family III (CaiB/BaiF)	CoA-transferase family III (CaiB/BaiF)	automated matches	automated matches	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	CoA-transferase family III (CaiB/BaiF)	8061774	4000567	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CoA-transferase family III (CaiB/BaiF)	8061775	3000607	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	CoA-transferase family III (CaiB/BaiF)	8061775	3000607	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CoA-transferase family III (CaiB/BaiF)	8061775	3000607	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CoA-transferase family III (CaiB/BaiF)	8061775	3000607	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CoA-transferase family III (CaiB/BaiF)	8061775	3000607	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	CoA-transferase family III (CaiB/BaiF)	8061775	3000607	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF02515	e4hl6A1	A: a/b three-layered sandwiches	X: SurE-like/CoA-transferase family III (CaiB/BaiF) (From Topology)	H: SurE-like/CoA-transferase family III (CaiB/BaiF) (From Topology)	T: SurE-like/CoA-transferase family III (CaiB/BaiF)	F: PF02515	ECOD (1.6)
B	PF02515	e4hl6B1	A: a/b three-layered sandwiches	X: SurE-like/CoA-transferase family III (CaiB/BaiF) (From Topology)	H: SurE-like/CoA-transferase family III (CaiB/BaiF) (From Topology)	T: SurE-like/CoA-transferase family III (CaiB/BaiF)	F: PF02515	ECOD (1.6)
C	PF02515	e4hl6C1	A: a/b three-layered sandwiches	X: SurE-like/CoA-transferase family III (CaiB/BaiF) (From Topology)	H: SurE-like/CoA-transferase family III (CaiB/BaiF) (From Topology)	T: SurE-like/CoA-transferase family III (CaiB/BaiF)	F: PF02515	ECOD (1.6)
D	PF02515	e4hl6D1	A: a/b three-layered sandwiches	X: SurE-like/CoA-transferase family III (CaiB/BaiF) (From Topology)	H: SurE-like/CoA-transferase family III (CaiB/BaiF) (From Topology)	T: SurE-like/CoA-transferase family III (CaiB/BaiF)	F: PF02515	ECOD (1.6)
E	PF02515	e4hl6E1	A: a/b three-layered sandwiches	X: SurE-like/CoA-transferase family III (CaiB/BaiF) (From Topology)	H: SurE-like/CoA-transferase family III (CaiB/BaiF) (From Topology)	T: SurE-like/CoA-transferase family III (CaiB/BaiF)	F: PF02515	ECOD (1.6)
F	PF02515	e4hl6F1	A: a/b three-layered sandwiches	X: SurE-like/CoA-transferase family III (CaiB/BaiF) (From Topology)	H: SurE-like/CoA-transferase family III (CaiB/BaiF) (From Topology)	T: SurE-like/CoA-transferase family III (CaiB/BaiF)	F: PF02515	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.10540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Crotonobetainyl-coa:carnitine coa-transferase	CATH (4.3.0)
A	3.30.1540.10	Alpha Beta	2-Layer Sandwich	formyl-coa transferase, domain 3	formyl-coa transferase, domain 3	CATH (4.3.0)
B	3.40.50.10540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Crotonobetainyl-coa:carnitine coa-transferase	CATH (4.3.0)
B	3.30.1540.10	Alpha Beta	2-Layer Sandwich	formyl-coa transferase, domain 3	formyl-coa transferase, domain 3	CATH (4.3.0)
C	3.40.50.10540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Crotonobetainyl-coa:carnitine coa-transferase	CATH (4.3.0)
C	3.30.1540.10	Alpha Beta	2-Layer Sandwich	formyl-coa transferase, domain 3	formyl-coa transferase, domain 3	CATH (4.3.0)
D	3.40.50.10540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Crotonobetainyl-coa:carnitine coa-transferase	CATH (4.3.0)
D	3.30.1540.10	Alpha Beta	2-Layer Sandwich	formyl-coa transferase, domain 3	formyl-coa transferase, domain 3	CATH (4.3.0)
E	3.40.50.10540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Crotonobetainyl-coa:carnitine coa-transferase	CATH (4.3.0)
E	3.30.1540.10	Alpha Beta	2-Layer Sandwich	formyl-coa transferase, domain 3	formyl-coa transferase, domain 3	CATH (4.3.0)
F	3.40.50.10540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Crotonobetainyl-coa:carnitine coa-transferase	CATH (4.3.0)
F	3.30.1540.10	Alpha Beta	2-Layer Sandwich	formyl-coa transferase, domain 3	formyl-coa transferase, domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF02515	CoA-transferase family III (CoA_transf_3)	CoA-transferase family III	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Uncharacterized protein YfdE	acetyl-CoA:oxalate CoA-transferase transferase activity, transferring sulphur-containing groups transferase activity catalytic activity CoA-transferase activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR023606	CoA-transferase family III domain 1 superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR044855	CoA-transferase family III domain 3 superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR003673	CoA-transferase family III	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.