4G0Y
Crystal structure of Arabidopsis AGO1 in complex with AMP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4g0ya1 | Alpha and beta proteins (a/b) | Phosphotyrosine protein phosphatases I-like | PIWI domain N-terminal-like | automated matches | automated matches | mouse-ear cress,thale-cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
A | d4g0ya2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | mouse-ear cress,thale-cress (Arabidopsis thaliana ) [TaxId: 3702 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Mid domain of argonaute | 8053596 | 3002210 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02171,PF16487 | e4g0yA1 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: PF02171,PF16487 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02171 | Piwi domain (Piwi) | Piwi domain | - | Family | |
PF16487 | Mid domain of argonaute (ArgoMid) | Mid domain of argonaute | The ArgoMid domain is found to be part of the Piwi-lobe of the argonaute proteins. It is composed of a parallel four-stranded beta-sheet core surrounded by four alpha-helices and two additional short alpha-helices. It most closely resembles the amino ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR014811 | Argonaute, linker 1 domain | Domain | |
IPR032472 | Argonaute linker 2 domain | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily | |
IPR045246 | Argonaute-like, PIWI domain | Domain | |
IPR003100 | PAZ domain | Domain | |
IPR032473 | Protein argonaute, Mid domain | Domain | |
IPR036085 | PAZ domain superfamily | Homologous Superfamily | |
IPR024357 | Argonaut, glycine-rich domain | Domain | |
IPR003165 | Piwi domain | Domain | |
IPR032474 | Protein argonaute, N-terminal | Domain |