4FUP

Structural basis for Zn2+-dependent intercellular adhesion in staphylococcal biofilms

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	G5 domain-like	8090261	3002424	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	G5 domain-like	8090264	3002424	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	G5 domain-like	8090265	3002424	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	G5 domain-like	8090261	3002424	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	G5 domain-like	8090264	3002424	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	G5 domain-like	8090265	3002424	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	G5	e4fupA4	A: beta complex topology	X: Head domain of nucleotide exchange factor GrpE	H: G5 and E repeats in surface protein G (From Topology)	T: G5 and E repeats in surface protein G	F: G5	ECOD (1.6)
A	SasG_E	e4fupA6	A: beta complex topology	X: Head domain of nucleotide exchange factor GrpE	H: G5 and E repeats in surface protein G (From Topology)	T: G5 and E repeats in surface protein G	F: SasG_E	ECOD (1.6)
B	G5	e4fupB4	A: beta complex topology	X: Head domain of nucleotide exchange factor GrpE	H: G5 and E repeats in surface protein G (From Topology)	T: G5 and E repeats in surface protein G	F: G5	ECOD (1.6)
B	SasG_E	e4fupB6	A: beta complex topology	X: Head domain of nucleotide exchange factor GrpE	H: G5 and E repeats in surface protein G (From Topology)	T: G5 and E repeats in surface protein G	F: SasG_E	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.20.230.10	Mainly Beta	Single Sheet	Resuscitation-promoting factor rpfb fold	Resuscitation-promoting factor rpfb.	CATH (4.3.0)
B	2.20.230.10	Mainly Beta	Single Sheet	Resuscitation-promoting factor rpfb fold	Resuscitation-promoting factor rpfb.	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF17041	E domain (SasG_E)	E domain	This short domain is about 50 amino acids in length. Its structure shows that it is composed of two beta sheets each of three strands. This domain is found associated with the Pfam:PF07501 domain and it has structural similarity with that domain alt ...	This short domain is about 50 amino acids in length. Its structure shows that it is composed of two beta sheets each of three strands. This domain is found associated with the Pfam:PF07501 domain and it has structural similarity with that domain although it is somewhat shorter [1]. The E domain forms part of a rod like structure.	Domain
A, B	PF07501	G5 domain (G5)	G5 domain	This domain is found in a wide range of extracellular proteins. It is found tandemly repeated in up to 8 copies. It is found in the N-terminus of peptidases belonging to the M26 family which cleave human IgA. The domain is also found in proteins in ...	This domain is found in a wide range of extracellular proteins. It is found tandemly repeated in up to 8 copies. It is found in the N-terminus of peptidases belonging to the M26 family which cleave human IgA. The domain is also found in proteins involved in metabolism of bacterial cell walls suggesting this domain may have an adhesive function.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Accumulation associated protein	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR005877	YSIRK Gram-positive signal peptide	Domain
A, B	IPR011098	G5 domain	Domain
A, B	IPR031477	E domain	Domain
A, B	IPR019931	LPXTG cell wall anchor domain	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.