4FHN

Nup37-Nup120 full-length complex from Schizosaccharomyces pombe

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Scaffolding nucleoporins	8090982	3002255	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nucleoporin beta-propeller domain	8090975	3000456	SCOP2B (2022-06-29)
D	SCOP2 Family	Coat nucleoporins Nup120/Nup160 NTD-like	8046888	4005351	SCOP2 (2022-06-29)
D	SCOP2 Family	Nup120 CTD-like	8090981	4007717	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Nucleoporin beta-propeller domain	8090975	3000456	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Scaffolding nucleoporins	8090982	3002255	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ANAPC4_WD40_2	e4fhnA1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_2	ECOD (1.6)
C	ANAPC4_WD40_2	e4fhnC2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_2	ECOD (1.6)
B	Nup160	e4fhnB1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nup160	ECOD (1.6)
B	EUF08018	e4fhnB2	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: EUF08018	ECOD (1.6)
B	KOG4521_2nd	e4fhnB3	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: KOG4521_2nd	ECOD (1.6)
D	Nup160	e4fhnD2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nup160	ECOD (1.6)
D	EUF08018	e4fhnD1	A: alpha arrays	X: Nucleoporin NUP120 helical domain (From Topology)	H: Nucleoporin NUP120 helical domain (From Topology)	T: Nucleoporin NUP120 helical domain	F: EUF08018	ECOD (1.6)
D	KOG4521_2nd	e4fhnD3	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: KOG4521_2nd	ECOD (1.6)
E [auth X]	ELFV_dehydrog	e4fhnX1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: ELFV_dehydrog	ECOD (1.6)
E [auth X]	ELFV_dehydrog_N	e4fhnX2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Aminoacid dehydrogenase-like, N-terminal domain	F: ELFV_dehydrog_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
B, D	PF21486	Nucleoporin NUP120, helical domain (NUP120_helical)	Nucleoporin NUP120, helical domain	This entry represents the helical domain of Nup120 from S. pombe referred to as the irregular helical bundle (IHB) [1,2], which makes extensive contacts with the propeller and helical bundle at the N-terminal. Nup120 functions as a component of the n ...	This entry represents the helical domain of Nup120 from S. pombe referred to as the irregular helical bundle (IHB) [1,2], which makes extensive contacts with the propeller and helical bundle at the N-terminal. Nup120 functions as a component of the nuclear pore complex (NPC). Deletion of this gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth.	Domain
B, D	PF11715	Nucleoporin Nup120/160 (Nup160)	Nucleoporin Nup120/160	-	Repeat
E [auth X]	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain (ELFV_dehydrog_N)	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain	-	Domain
E [auth X]	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase (ELFV_dehydrog)	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	NUCLEOPORIN NUP37	-	localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport cellular process establishment of localization	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore
B, D	Nucleoporin nup120	structural molecule activity structural constituent of nuclear pore	cellular localization nitrogen compound transport nucleocytoplasmic transport transport cellular biosynthetic process nuclear transport mRNA transport localization organic substance metabolic process mRNA export from nucleus establishment of localization in cell organic substance biosynthetic process RNA localization nuclear export cellular localization nitrogen compound transport nucleocytoplasmic transport transport cellular biosynthetic process nuclear transport mRNA transport localization organic substance metabolic process mRNA export from nucleus establishment of localization in cell organic substance biosynthetic process RNA localization nuclear export nucleobase-containing compound transport RNA transport organic substance transport cellular metabolic process nucleic acid transport poly(A)+ mRNA export from nucleus intracellular transport gene expression establishment of localization macromolecule biosynthetic process RNA export from nucleus establishment of RNA localization biosynthetic process macromolecule localization cellular process metabolic process macromolecule metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle cellular anatomical entity endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle cellular anatomical entity endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore membrane-enclosed lumen intracellular organelle lumen organelle lumen nuclear periphery nuclear lumen
E [auth X]	Glutamate dehydrogenase	oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity glutamate dehydrogenase [NAD(P)+] activity oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor catalytic activity binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding heterocyclic compound binding small molecule binding	organic substance metabolic process amino acid metabolic process primary metabolic process metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR037626	Nucleoporin Nup37	Family
A, C	IPR001680	WD40 repeat	Repeat
A, C	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, C	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B, D	IPR021717	Nucleoporin Nup120/160	Family
E [auth X]	IPR006095	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase	Family
E [auth X]	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
E [auth X]	IPR046346	Aminoacid dehydrogenase-like, N-terminal domain superfamily	Homologous Superfamily
E [auth X]	IPR033922	NAD(P) binding domain of glutamate dehydrogenase	Domain
E [auth X]	IPR006096	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, C-terminal	Domain
E [auth X]	IPR006097	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, dimerisation domain	Domain
E [auth X]	IPR014362	Glutamate dehydrogenase	Family
E [auth X]	IPR033524	Leu/Phe/Val dehydrogenases active site	Active Site

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.