4DVZ
Crystal structure of the Helicobacter pylori CagA oncoprotein
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF18971 | e4dvzA2 | A: alpha bundles | X: Oncogenic effector CagA domain III (From Topology) | H: Oncogenic effector CagA domain III (From Topology) | T: Oncogenic effector CagA domain III | F: PF18971 | ECOD (1.6) |
A | PF18971 | e4dvzA1 | A: a+b complex topology | X: Oncogenic effector CagA meander beta sheet domain (From Topology) | H: Oncogenic effector CagA meander beta sheet domain (From Topology) | T: Oncogenic effector CagA meander beta sheet domain | F: PF18971 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.1270 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | CagA exotoxin domain III | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18971 | CagA protein (CagA_N) | CagA protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Cytotoxicity-associated immunodominant antigen | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045157 | CagA, N-terminal | Domain | |
IPR005169 | CagA exotoxin, phosphopeptide substrate mimic region | Domain | |
IPR004355 | Type IV secretion system CagA exotoxin | Family |