3VYR
Crystal structure of the HypC-HypD complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3vyra_ | All beta proteins | OB-fold | HupF/HypC-like | HupF/HypC-like | Hydrogenase expression/formation protein HypC | (Thermococcus kodakarensis KOD1 ) [TaxId: 69014 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | HypC/PAN OB-fold domain-like | 8038052 | 3000354 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01455 | e3vyrA1 | A: beta barrels | X: OB-fold | H: HupF/HypC-like (From Topology) | T: HupF/HypC-like | F: PF01455 | ECOD (1.6) |
B | PF01924 | e3vyrB1 | A: a/b three-layered sandwiches | X: Hydrogenase expression/formation protein HypD (From Topology) | H: Hydrogenase expression/formation protein HypD (From Topology) | T: Hydrogenase expression/formation protein HypD | F: PF01924 | ECOD (1.6) |
B | PF01924 | e3vyrB3 | A: few secondary structure elements | X: HypD Fe-S cluster binding domain (From Topology) | H: HypD Fe-S cluster binding domain (From Topology) | T: HypD Fe-S cluster binding domain | F: PF01924 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
B | 3.40.50.11750 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HypD, alpha/beta domain 1 | CATH (4.3.0) |
B | 3.40.50.11740 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HypD, alpha/beta domain 2 | CATH (4.3.0) |
B | 6.10.20.100 | Special | Helix non-globular | Arc Repressor Mutant, subunit A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01455 | HupF/HypC family (HupF_HypC) | HupF/HypC family | - | Family | |
PF01924 | Hydrogenase formation hypA family (HypD) | Hydrogenase formation hypA family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR019812 | Hydrogenase assembly chaperone, conserved site | Conserved Site | |
IPR001109 | Hydrogenase expression/formation protein, HupF/HypC | Family | |
IPR002780 | Hydrogenase formation HypD protein | Family | |
IPR042243 | HypD, domain 1 | Homologous Superfamily | |
IPR042244 | HypD, domain 2 | Homologous Superfamily |