3VYI

Crystal Structure of a trimeric coiled-coil (I/I-type) assembly domain from the voltage-gated proton channel mutant

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Voltage-gated proton channel dimerisation region-like	8093006	3002659	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Voltage-gated proton channel dimerisation region-like	8093006	3002659	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Voltage-gated proton channel dimerisation region-like	8093006	3002659	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Voltage-gated proton channel dimerisation region-like	8093006	3002659	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Voltage-gated proton channel dimerisation region-like	8093006	3002659	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Voltage-gated proton channel dimerisation region-like	8093006	3002659	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Voltage-gated proton channel dimerisation region-like	8093006	3002659	SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C [auth D]	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
D [auth C]	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
E	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
F	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
G [auth H]	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
H [auth G]	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
I	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
J	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G], I, J, K, L	PF16799	C-terminal membrane-localisation domain of ion-channel, VCN1 (VGPC1_C)	C-terminal membrane-localisation domain of ion-channel, VCN1	-	Coiled-coil
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G], I, J, K, L	PF00520	Ion transport protein (Ion_trans)	Ion transport protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G], I, J, K, L	Voltage-gated hydrogen channel 1	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity gated channel activity monoatomic ion channel activity proton channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity gated channel activity monoatomic ion channel activity proton channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic cation channel activity monoatomic cation channel activity passive transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity voltage-gated proton channel activity identical protein binding protein binding binding	transport proton transmembrane transport monoatomic ion transmembrane transport inorganic ion transmembrane transport establishment of localization inorganic cation transmembrane transport transmembrane transport monoatomic cation transmembrane transport localization monoatomic ion transport cellular process monoatomic cation transport response to stimulus response to metal ion transport proton transmembrane transport monoatomic ion transmembrane transport inorganic ion transmembrane transport establishment of localization inorganic cation transmembrane transport transmembrane transport monoatomic cation transmembrane transport localization monoatomic ion transport cellular process monoatomic cation transport response to stimulus response to metal ion response to chemical response to zinc ion response to inorganic substance regulation of biological process regulation of cellular process cellular metabolic process reactive oxygen species metabolic process biological regulation positive regulation of biological process regulation of superoxide metabolic process regulation of cellular metabolic process positive regulation of cellular metabolic process positive regulation of reactive oxygen species metabolic process superoxide metabolic process positive regulation of metabolic process superoxide anion generation metabolic process positive regulation of superoxide anion generation regulation of superoxide anion generation regulation of metabolic process regulation of reactive oxygen species metabolic process positive regulation of cellular process response to pH response to abiotic stimulus cellular response to stimulus cellular response to inorganic substance cellular response to metal ion cellular response to chemical stimulus cellular response to zinc ion reactive oxygen species biosynthetic process regulation of biosynthetic process regulation of reactive oxygen species biosynthetic process biosynthetic process homeostatic process regulation of intracellular pH cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis regulation of pH monoatomic ion homeostasis intracellular chemical homeostasis regulation of biological quality monoatomic cation homeostasis regulation of cellular pH intracellular monoatomic ion homeostasis cellular response to pH cellular response to abiotic stimulus cellular response to environmental stimulus	membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle phagocytic vesicle cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle phagocytic vesicle membrane cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle phagocytic vesicle cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle phagocytic vesicle membrane cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle endocytic vesicle membrane cytoplasm vesicle organelle membrane endocytic vesicle cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane protein-containing complex transmembrane transporter complex membrane protein complex transporter complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G], I, J, K, L	IPR005821	Ion transport domain	Domain
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G], I, J, K, L	IPR031846	Voltage-gated hydrogen channel 1	Family
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G], I, J, K, L	IPR031844	Voltage-gated hydrogen channel 1, C-terminal membrane-localisation domain	Domain
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G], I, J, K, L	IPR027359	Voltage-dependent channel domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.