Annotations: 3S4Y

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3s4ya2	All beta proteins	Double-stranded beta-helix	Thiamin pyrophosphokinase, substrate-binding domain	Thiamin pyrophosphokinase, substrate-binding domain	Thiamin pyrophosphokinase, substrate-binding domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d3s4ya1	Alpha and beta proteins (a/b)	Thiamin pyrophosphokinase, catalytic domain	Thiamin pyrophosphokinase, catalytic domain	Thiamin pyrophosphokinase, catalytic domain	Thiamin pyrophosphokinase, catalytic domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3s4yb2	All beta proteins	Double-stranded beta-helix	Thiamin pyrophosphokinase, substrate-binding domain	Thiamin pyrophosphokinase, substrate-binding domain	Thiamin pyrophosphokinase, substrate-binding domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d3s4yb1	Alpha and beta proteins (a/b)	Thiamin pyrophosphokinase, catalytic domain	Thiamin pyrophosphokinase, catalytic domain	Thiamin pyrophosphokinase, catalytic domain	Thiamin pyrophosphokinase, catalytic domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TPK_B1_binding	e3s4yA1	A: beta sandwiches	X: jelly-roll	H: Thiamin pyrophosphokinase, substrate-binding domain (From Topology)	T: Thiamin pyrophosphokinase, substrate-binding domain	F: TPK_B1_binding	ECOD (1.6)
A	TPK_catalytic	e3s4yA2	A: a/b three-layered sandwiches	X: Thiamin pyrophosphokinase, catalytic domain (From Topology)	H: Thiamin pyrophosphokinase, catalytic domain (From Topology)	T: Thiamin pyrophosphokinase, catalytic domain	F: TPK_catalytic	ECOD (1.6)
B	TPK_B1_binding	e3s4yB1	A: beta sandwiches	X: jelly-roll	H: Thiamin pyrophosphokinase, substrate-binding domain (From Topology)	T: Thiamin pyrophosphokinase, substrate-binding domain	F: TPK_B1_binding	ECOD (1.6)
B	TPK_catalytic	e3s4yB2	A: a/b three-layered sandwiches	X: Thiamin pyrophosphokinase, catalytic domain (From Topology)	H: Thiamin pyrophosphokinase, catalytic domain (From Topology)	T: Thiamin pyrophosphokinase, catalytic domain	F: TPK_catalytic	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.10240	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Thiamin pyrophosphokinase, catalytic domain	CATH (4.3.0)
B	3.40.50.10240	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Thiamin pyrophosphokinase, catalytic domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF04265	Thiamin pyrophosphokinase, vitamin B1 binding domain (TPK_B1_binding)	Thiamin pyrophosphokinase, vitamin B1 binding domain	Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyses the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the format ...	Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyses the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [1].	Domain
A, B	PF04263	Thiamin pyrophosphokinase, catalytic domain (TPK_catalytic)	Thiamin pyrophosphokinase, catalytic domain	Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyses the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the format ...	Family of thiamin pyrophosphokinase (EC:2.7.6.2). Thiamin pyrophosphokinase (TPK) catalyses the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggest that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Thiamin pyrophosphokinase 1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups cation binding vitamin binding thiamine binding alcohol binding sulfur compound binding diphosphotransferase activity thiamine diphosphokinase activity identical protein binding protein binding	pyrimidine-containing compound metabolic process organonitrogen compound metabolic process cellular metabolic process organic hydroxy compound metabolic process thiamine-containing compound metabolic process alcohol metabolic process thiamine metabolic process vitamin metabolic process organic cyclic compound metabolic process organic substance metabolic process small molecule metabolic process metabolic process sulfur compound metabolic process cellular process pyrimidine-containing compound metabolic process organonitrogen compound metabolic process cellular metabolic process organic hydroxy compound metabolic process thiamine-containing compound metabolic process alcohol metabolic process thiamine metabolic process vitamin metabolic process organic cyclic compound metabolic process organic substance metabolic process small molecule metabolic process metabolic process sulfur compound metabolic process cellular process water-soluble vitamin metabolic process primary alcohol metabolic process cellular biosynthetic process organonitrogen compound biosynthetic process vitamin biosynthetic process organic substance biosynthetic process phosphate-containing compound metabolic process thiamine diphosphate metabolic process pyrimidine-containing compound biosynthetic process phosphorus metabolic process water-soluble vitamin biosynthetic process small molecule biosynthetic process sulfur compound biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process organic cyclic compound biosynthetic process thiamine diphosphate biosynthetic process thiamine-containing compound biosynthetic process phosphorylation	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036759	Thiamin pyrophosphokinase, catalytic domain superfamily	Homologous Superfamily
A, B	IPR006282	Thiamin pyrophosphokinase	Family
A, B	IPR007373	Thiamin pyrophosphokinase, thiamin-binding domain	Domain
A, B	IPR016966	Thiamin pyrophosphokinase, eukaryotic	Family
A, B	IPR036371	Thiamin pyrophosphokinase, thiamin-binding domain superfamily	Homologous Superfamily
A, B	IPR007371	Thiamin pyrophosphokinase, catalytic domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9H3S4	childhood encephalopathy due to thiamine pyrophosphokinase deficiency subependymal giant cell astrocytoma ulcerative colitis astrocytic tumor Crohn disease Leigh syndrome Mitochondrial Diseases osteosarcoma pancreatic intraductal papillary-mucinous carcinoma prostate carcinoma transitional cell carcinoma breast carcinoma intellectual disability lung cancer non-small cell lung carcinoma childhood encephalopathy due to thiamine pyrophosphokinase deficiency subependymal giant cell astrocytoma ulcerative colitis astrocytic tumor Crohn disease Leigh syndrome Mitochondrial Diseases osteosarcoma pancreatic intraductal papillary-mucinous carcinoma prostate carcinoma transitional cell carcinoma breast carcinoma intellectual disability lung cancer non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pterygium tuberculosis large cell medulloblastoma malignant ependymoma oligodendroglioma ovarian carcinoma primitive neuroectodermal tumor

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.