3R9X
Crystal structure of Era in complex with MgGDPNP, nucleotides 1506-1542 of 16S ribosomal RNA, and KsgA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d3r9xb_ | Alpha and beta proteins (a/b) | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | automated matches | automated matches | (Aquifex aeolicus ) [TaxId: 63363 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8089833 | 3001043 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8089831 | 3002022 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8073146 | 3000118 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | S13-like H2TH domain | 8090720 | 3000053 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07650 | e3r9xA1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
A | PF01926 | e3r9xA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF01926 | ECOD (1.6) |
B | PF00398 | e3r9xB2 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00398 | ECOD (1.6) |
B | PF00398 | e3r9xB1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF00398 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 3.30.300.20 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
B | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
B | 1.10.8.100 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01926 | 50S ribosome-binding GTPase (MMR_HSR1) | 50S ribosome-binding GTPase | - | Family | |
PF07650 | KH domain (KH_2) | KH domain | - | Domain | |
PF00398 | Ribosomal RNA adenine dimethylase (RrnaAD) | Ribosomal RNA adenine dimethylase | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR030388 | Era-type guanine nucleotide-binding (G) domain | Domain | |
IPR009019 | K homology domain superfamily, prokaryotic type | Homologous Superfamily | |
IPR004044 | K Homology domain, type 2 | Domain | |
IPR015946 | K homology domain-like, alpha/beta | Homologous Superfamily | |
IPR005662 | GTPase Era | Family | |
IPR005225 | Small GTP-binding protein domain | Domain | |
IPR006073 | GTP binding domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR001737 | Ribosomal RNA adenine methyltransferase KsgA/Erm | Family | |
IPR020598 | Ribosomal RNA adenine methylase transferase, N-terminal | Domain | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR023165 | rRNA adenine dimethylase-like, C-terminal | Homologous Superfamily | |
IPR011530 | Ribosomal RNA adenine dimethylase | Family | |
IPR020596 | Ribosomal RNA adenine methylase transferase, conserved site | Conserved Site |