3QFW
Crystal structure of Rubisco-like protein from Rhodopseudomonas palustris
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e3qfwA3 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF00016 | e3qfwA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
B | F_UNCLASSIFIED | e3qfwB1 | A: a+b two layers | X: Alpha-beta plaits | H: RuBisCO, large subunit, small (N-terminal) domain (From Topology) | T: RuBisCO, large subunit, small (N-terminal) domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF00016 | e3qfwB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF00016 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.150 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RuBisCO large subunit, N-terminal domain | CATH (4.3.0) |
A | 3.20.20.110 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | CATH (4.3.0) |
B | 3.30.70.150 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RuBisCO large subunit, N-terminal domain | CATH (4.3.0) |
B | 3.20.20.110 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00016 | Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large) | Ribulose bisphosphate carboxylase large chain, catalytic domain | The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036376 | Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily | Homologous Superfamily | |
IPR000685 | Ribulose bisphosphate carboxylase, large subunit, C-terminal | Domain | |
IPR033966 | RuBisCO | Family | |
IPR036422 | RuBisCO large subunit, N-terminal domain superfamily | Homologous Superfamily |