Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyASTN-2 EGF-like domain8052104 4007581 SCOP2 (2022-06-29)
ASCOP2 FamilyMACPF-like8049567 4006548 SCOP2 (2022-06-29)
ASCOP2 FamilyPLC-like (P variant)8052102 4002218 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyEGF/Laminin-like8052105 3000412 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyMAC/CDC-like8052037 3002081 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyC2 domain (calcium/lipid-binding domain calb)8052103 3000965 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AC2e3nsjA3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: C2 domain (From Topology)T: C2 domainF: C2ECOD (1.6)
AMACPFe3nsjA1 A: beta complex topologyX: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology)T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domainsF: MACPFECOD (1.6)
AC2_Perforine3nsjA2 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: C2_PerforinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.150 Mainly Beta Sandwich Immunoglobulin-like C2 domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01823MAC/Perforin domain (MACPF)MAC/Perforin domainThe membrane-attack complex (MAC) of the complement system forms transmembrane channels. These channels disrupt the phospholipid bilayer of target cells, leading to cell lysis and death. A number of proteins participate in the assembly of the MAC. Fr ...The membrane-attack complex (MAC) of the complement system forms transmembrane channels. These channels disrupt the phospholipid bilayer of target cells, leading to cell lysis and death. A number of proteins participate in the assembly of the MAC. Freshly activated C5b binds to C6 to form a C5b-6 complex, then to C7 forming the C5b-7 complex. The C5b-7 complex binds to C8, which is composed of three chains (alpha, beta, and gamma), thus forming the C5b-8 complex. C5b-8 subsequently binds to C9 and acts as a catalyst in the polymerisation of C9. Active MAC has a subunit composition of C5b-C6-C7-C8-C9{n}. Perforin is a protein found in cytolytic T-cell and killer cells. In the presence of calcium, perforin polymerises into transmembrane tubules and is capable of lysing, non-specifically, a variety of target cells. There are a number of regions of similarity in the sequences of complement components C6, C7, C8-alpha, C8-beta, C9 and perforin. The X-ray crystal structure of a MACPF domain reveals that it shares a common fold with bacterial cholesterol dependent cytolysins (Pfam:PF01289) such as perfringolysin O. Three key pieces of evidence suggests that MACPF domains and CDCs are homologous: Functional similarity (pore formation), conservation of three glycine residues at a hinge in both families and conservation of a complex core fold [1].
Domain
PF00168C2 domain (C2)C2 domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Perforin-1

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMC2 domain