3KOY
Crystal Structure of ornithine 4,5 aminomutase in complex with ornithine (Aerobic)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth E] | SCOP2B Superfamily | OraS globular domain-like | 8092026 | 3002551 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | OraS globular domain-like | 8092026 | 3002551 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | OraS globular domain-like | 8092026 | 3002551 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | OraS globular domain-like | 8092026 | 3002551 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF16554 | e3koyA5 | A: a+b two layers | X: Dodecin subunit-like | H: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain (From Topology) | T: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | F: PF16554 | ECOD (1.6) |
A | PF09043 | e3koyA3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF09043 | ECOD (1.6) |
A | PF02310 | e3koyA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF02310 | ECOD (1.6) |
C [auth B] | PF16554 | e3koyB5 | A: a+b two layers | X: Dodecin subunit-like | H: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain (From Topology) | T: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | F: PF16554 | ECOD (1.6) |
C [auth B] | PF09043 | e3koyB3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF09043 | ECOD (1.6) |
C [auth B] | PF02310 | e3koyB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF02310 | ECOD (1.6) |
E [auth C] | PF16554 | e3koyC5 | A: a+b two layers | X: Dodecin subunit-like | H: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain (From Topology) | T: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | F: PF16554 | ECOD (1.6) |
E [auth C] | PF09043 | e3koyC3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF09043 | ECOD (1.6) |
E [auth C] | PF02310 | e3koyC1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF02310 | ECOD (1.6) |
G [auth D] | PF16554 | e3koyD5 | A: a+b two layers | X: Dodecin subunit-like | H: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain (From Topology) | T: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | F: PF16554 | ECOD (1.6) |
G [auth D] | PF09043 | e3koyD3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF09043 | ECOD (1.6) |
G [auth D] | PF02310 | e3koyD1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF02310 | ECOD (1.6) |
B [auth E] | PF16552 | e3koyE1 | A: alpha arrays | X: D-ornithine aminomutase S component-related (From Topology) | H: D-ornithine aminomutase S component-related (From Topology) | T: D-ornithine aminomutase S component-related | F: PF16552 | ECOD (1.6) |
D [auth F] | PF16552 | e3koyF1 | A: alpha arrays | X: D-ornithine aminomutase S component-related (From Topology) | H: D-ornithine aminomutase S component-related (From Topology) | T: D-ornithine aminomutase S component-related | F: PF16552 | ECOD (1.6) |
F [auth G] | PF16552 | e3koyG1 | A: alpha arrays | X: D-ornithine aminomutase S component-related (From Topology) | H: D-ornithine aminomutase S component-related (From Topology) | T: D-ornithine aminomutase S component-related | F: PF16552 | ECOD (1.6) |
H | PF16552 | e3koyH1 | A: alpha arrays | X: D-ornithine aminomutase S component-related (From Topology) | H: D-ornithine aminomutase S component-related (From Topology) | T: D-ornithine aminomutase S component-related | F: PF16552 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B], E [auth C], G [auth D] | PF09043 | D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit (Lys-AminoMut_A) | D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit | Members of his family are involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as co-factors. The structure is predominantly a PLP-binding TIM ba ... | Domain |
A, C [auth B], E [auth C], G [auth D] | PF16554 | Dimerisation domain of d-ornithine 4,5-aminomutase (OAM_dimer) | Dimerisation domain of d-ornithine 4,5-aminomutase | This family is the short dimerisation domain of the enzyme D-ornithine 4,5-aminomutase. It sits between the TIM-barrel Pfam:PF09043 and Pfam:PF02310. The enzyme is an alpha2-beta2-heterodimer that converts D-ornithine to 2,4-diaminopentanoic acid by ... | Domain |
A, C [auth B], E [auth C], G [auth D] | PF02310 | B12 binding domain (B12-binding) | B12 binding domain | This domain binds to B12 (adenosylcobamide)[1-3], it is found in several enzymes, such as glutamate mutase Swiss:Q05488, methionine synthase Swiss:Q99707 and methylmalonyl-CoA mutase Swiss:P22033. It contains a conserved DxHxxGx(41)SxVx(26)GG motif, ... | Domain |
B [auth E], D [auth F], F [auth G], H | PF16552 | D-ornithine 4,5-aminomutase alpha-subunit (OAM_alpha) | D-ornithine 4,5-aminomutase alpha-subunit | OAM_alpha is the 12.8kDa, alpha subunit of d-ornithine 4,5-aminomutase, or OAM, an enzyme that converts d-ornithine to 2,4-diaminopentanoic acid by way of radical propagation from an adenosylcobalamin to a pyridoxal 5'-phosphate cofactor. OAM is an a ... | Domain |